View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9243_low_24 (Length: 274)
Name: NF9243_low_24
Description: NF9243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9243_low_24 |
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| [»] scaffold0005 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 232658 - 232385
Alignment:
| Q |
1 |
gtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacatttgctttccaacaannnnnnnnagatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
232658 |
gtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacattttctttccaacaaaaatttctagatca |
232559 |
T |
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| Q |
101 |
gatggataatcacaattgtcgctagtttgcagaaatcaacaatggcatcaaattaggtgctacatagtgtggacattaagtatcacctgactgggtgcat |
200 |
Q |
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||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
232558 |
gatggataaccacaattgtcgctagtctgcataaatcaacaatggcatcaaattaggtgctacatagtgtggacatttagtatcacctgactgggtgcat |
232459 |
T |
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| Q |
201 |
caatcagatcatatacactcctgccaacataagtttggacattacgatcaaacaaaatgaaagttgttgatccg |
274 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
232458 |
caatcagatcatgtacactcctgccaacataagtttggacattacgatcaaacaaaatgaaagttgttgatccg |
232385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 14584717 - 14584990
Alignment:
| Q |
1 |
gtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacatttgctttccaacaannnnnnnnagatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
14584717 |
gtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacattttctttccaacaaaaatttctagatca |
14584816 |
T |
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| Q |
101 |
gatggataatcacaattgtcgctagtttgcagaaatcaacaatggcatcaaattaggtgctacatagtgtggacattaagtatcacctgactgggtgcat |
200 |
Q |
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||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14584817 |
gatggataaccacaattgtcgctagtctgcataaatcaacaatggcatcaaattaggtgctacatagtgtggacatttagtatcacctgactgggtgcat |
14584916 |
T |
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| Q |
201 |
caatcagatcatatacactcctgccaacataagtttggacattacgatcaaacaaaatgaaagttgttgatccg |
274 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14584917 |
caatcagatcatgtacactcctgccaacataagtttggacattacgatcaaacaaaatgaaagttgttgatccg |
14584990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 49825272 - 49825356
Alignment:
| Q |
1 |
gtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacatttgctttccaacaa |
86 |
Q |
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||||||||||||| ||| ||||||||| | ||||| ||||||||||||||||||||||||||||| | |||||| |||||||||| |
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| T |
49825272 |
gtccttttgacagcatagttgcgccaat-tatgcattaagttcccatccgtaatttcaaccttaaatagcatttgttttccaacaa |
49825356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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