View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9243_low_3 (Length: 753)
Name: NF9243_low_3
Description: NF9243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9243_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 669; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 64 - 736
Target Start/End: Complemental strand, 53616058 - 53615386
Alignment:
| Q |
64 |
ccagacacaaacagagaaatggtgtctcccaaaaacataggaaaatatagacttggcaggacaataggagaaggtacattctctaaggtaaagattgctt |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53616058 |
ccagacacaaacagagaaatggtgtctcccaaaaacataggaaaatatagacttggcaggacaataggagaaggtacattctctaaggtaaagattgctt |
53615959 |
T |
|
| Q |
164 |
taaatagcaacaatggtgagaaggtagcaatcaaggtcattgacaaacaaatggtcttgaaaaacaatctaaaacatcaggtaaacctcattttggtcct |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53615958 |
taaatagcaacaatggtgagaaggtagcaatcaaggtcattgacaaacaaatggtcttgaaaaacaatctaaaacatcaggtaaacctcattttggtcct |
53615859 |
T |
|
| Q |
264 |
tctttttcccccttcaaaaattaggtattttacttcaaatattaaggccaaaacatgtttcaggtacaaagtgagattagaacaatgaaacttctacatc |
363 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53615858 |
tctttttcccccttcaaaaagtaggtattttacttcaaatattaaggccaaaacatgtttcaggtacaaagtgagattagaacaatgaaacttctacatc |
53615759 |
T |
|
| Q |
364 |
atccaaatatagttagaattcatgaggtatattatacctgctggtgttggaattcttgtgagtcttgaagattcacaatccctttctcactcactagtat |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53615758 |
atccaaatatagttagaattcatgaggtatattatacctgctggtgttggaattcttgtgagtcttgaagattcacaatccctttctcactcactagtat |
53615659 |
T |
|
| Q |
464 |
taatttttgaatgaatttcatcataaaacaggttattggcacaaaaacaaaaatatacattgtgatggaatatgtatcaggaggtcaactattggacaaa |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53615658 |
taatttttgaatgaatttcatcataaaacaggttattggcacaaaaacaaaaatatacattgtgatggaatatgtatcaggaggtcaactattggacaaa |
53615559 |
T |
|
| Q |
564 |
atagtgagaatcatatcaacaatctctttgttgttcaaatgttgtgtacttacaattataatacttcaattctgaaaattttgtttatgcagtcctattg |
663 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53615558 |
atagtgagaatcatatcaacaatctctttgttgttcaaatgttgtgtacttacaattataatacttcaattctgaaaattttgtttatgcagtcctattg |
53615459 |
T |
|
| Q |
664 |
caacaagttgaatgaatgtgaggcaagaaaactattccaacaacttattgacgccgtcgactactgccataac |
736 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53615458 |
caacaagttgaatgaatgtgaggcaagaaaactattccaacaacttattgacgccgtcgactactgccataac |
53615386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 301 - 351
Target Start/End: Complemental strand, 17923576 - 17923526
Alignment:
| Q |
301 |
aatattaaggccaaaacatgtttcaggtacaaagtgagattagaacaatga |
351 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17923576 |
aatattatggccaaaccatgtttcaggtacaaagtgagattagaacaatga |
17923526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University