View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9243_low_30 (Length: 244)
Name: NF9243_low_30
Description: NF9243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9243_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 7052198 - 7052420
Alignment:
| Q |
1 |
cgactggaaactagttcaccatactcatcaatttcttaggaaggtatgttcctaatgctaactaaggtgcggacggg-actgccttgcttgatagagttt |
99 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
7052198 |
cgactggaaactagtttaccatactcatcaatttcttaggaaggtatgttcctaatgctaactaaggtgcagacgggcactgccttgcttgatagagttt |
7052297 |
T |
|
| Q |
100 |
ctcttacaacttcaaacttaacttaagtcatgttggaggccgacaatgatcgtcatttaagaaaagcggatcatgttactgttgtcatatttcttgtcgc |
199 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
7052298 |
cttttacaacttcaaacttaacttaagtcatgttggaggccgactatgatcgtcatttaagaaaaacggatcatgttactgttgtgatatttcttgtcgc |
7052397 |
T |
|
| Q |
200 |
gcttttctatttctctttgttca |
222 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
7052398 |
gcttttctatttctctttgttca |
7052420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 220
Target Start/End: Original strand, 7038910 - 7039129
Alignment:
| Q |
2 |
gactggaaactagttcaccatactcatcaatttcttaggaaggtatgttcctaatgctaactaaggtgcggacggga-ctgccttgcttgatagagtttc |
100 |
Q |
| |
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||||||||| ||||||||||| |||||||||||||||||||||||||||| | |||||||||| | | | ||| || ||| | |||| | |||||||| |
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| T |
7038910 |
gactggaaattagttcaccatgctcatcaatttcttaggaaggtatgttcattatgctaactaggatccagacaggtgctgacgtgctcggtagagttta |
7039009 |
T |
|
| Q |
101 |
tcttacaacttcaaacttaacttaagtcatgttggaggccgacaatgatcgtcatttaagaaaagcggatcatgttactgttgtcatatttcttgtcgcg |
200 |
Q |
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| | | ||||||||||||||||| ||||||| |||||||| || |||||| ||||||||||||||| |||||||||| | ||||||||||||||||| | |
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| T |
7039010 |
tttcataacttcaaacttaacttcagtcatgatggaggccaactatgatcttcatttaagaaaagcagatcatgttattcttgtcatatttcttgtcaca |
7039109 |
T |
|
| Q |
201 |
cttttctatttctctttgtt |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
7039110 |
cttttctatttctctttgtt |
7039129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 7046189 - 7046348
Alignment:
| Q |
1 |
cgactggaaactagttcaccatactcatcaatttcttaggaaggtatgttcctaatgctaactaaggtgcggacggg-actgccttgcttgatagagttt |
99 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| ||| || ||||| ||||||||| |
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| T |
7046189 |
cgactggaaactagttcacaatactcatcaatttcttaggaaggtatgttcgtaatgctaactagggtgcagacgggaacttccgtgcttcatagagttt |
7046288 |
T |
|
| Q |
100 |
ctcttacaacttcaaacttaacttaagtcatgttggaggccgacaatgatcgtcatttaa |
159 |
Q |
| |
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|| | |||||||||||||||| |||||||||||||||||||||| |||||| | |||||| |
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|
| T |
7046289 |
ctttcacaacttcaaacttaatttaagtcatgttggaggccgactatgatcttaatttaa |
7046348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 7026382 - 7026483
Alignment:
| Q |
1 |
cgactggaaactagttcaccatactcatcaatttcttaggaaggtatgttcctaatgctaactaaggtgcggacggg-actgccttgcttgatagagttt |
99 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| || ||||||||||||||| |
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| T |
7026382 |
cgactggaaacttgttcacaatacttatcaatttcttaggaaggtatgttcctaatgctaactagggtgcagacgggcacttccgtgcttgatagagttt |
7026481 |
T |
|
| Q |
100 |
ct |
101 |
Q |
| |
|
|| |
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|
| T |
7026482 |
ct |
7026483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 7019574 - 7019781
Alignment:
| Q |
1 |
cgactggaaactagttcaccatactcatcaatttcttaggaaggtatgttcctaatgctaactaaggtgcggacggg-actgccttgcttgatagagttt |
99 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| |||| | | | | ||| || |||| |||| ||||| |
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|
| T |
7019574 |
cgactggaaattagttcaccatactcatcaatttcttaggaaggtatgttcattatgttaacaaggattcagactggcactgag------gatatagttt |
7019667 |
T |
|
| Q |
100 |
ctcttacaacttcaaacttaacttaagtcatgttggaggccgacaatgatcgtcatttaagaaaagcggatcatgttactgttgtcatatttcttgtcgc |
199 |
Q |
| |
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| | ||||||||||||||||| ||| ||||| ||||||||||| |||||| || ||||||||||| | |||| ||| || | |||||||||||||| | |
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|
| T |
7019668 |
ttttcacaacttcaaacttaacctaattcatgatggaggccgactatgatcttcgtttaagaaaagttggtcatattattgctatcatatttcttgtcac |
7019767 |
T |
|
| Q |
200 |
gcttttctatttct |
213 |
Q |
| |
|
|||||||||||||| |
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|
| T |
7019768 |
gcttttctatttct |
7019781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 7026492 - 7026558
Alignment:
| Q |
156 |
ttaagaaaagcggatcatgttactgttgtcatatttcttgtcgcgcttttctatttctctttgttca |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
7026492 |
ttaagaaaagcggatcatgttactgttgtcatatttcttgtcgcgcttttttatttcactttgttca |
7026558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 6993677 - 6993746
Alignment:
| Q |
1 |
cgactggaaactagttcaccatactcatcaatttcttaggaaggtatgttcctaatgctaactaaggtgc |
70 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6993677 |
cgactggaaactagttcaccatacttttcaatttcttaggaaggtatgttcctaatgctaactagggtgc |
6993746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 7003795 - 7003858
Alignment:
| Q |
1 |
cgactggaaactagttcaccatactcatcaatttcttaggaaggtatgttcctaatgctaacta |
64 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||| |||| |
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|
| T |
7003795 |
cgactggaaactagttcaccaaactcatcaatttcttaggaaggtatgttcattatgctcacta |
7003858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 7013236 - 7013285
Alignment:
| Q |
2 |
gactggaaactagttcaccatactcatcaatttcttaggaaggtatgttc |
51 |
Q |
| |
|
||||||||| |||||| | || |||||||||||||||||||||||||||| |
|
|
| T |
7013236 |
gactggaaattagttcgcgatgctcatcaatttcttaggaaggtatgttc |
7013285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 6993822 - 6993854
Alignment:
| Q |
145 |
atgatcgtcatttaagaaaagcggatcatgtta |
177 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
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|
| T |
6993822 |
atgatcttcatttaagaaaagcggatcatgtta |
6993854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 46183970 - 46183929
Alignment:
| Q |
5 |
tggaaactagttcaccatactcatcaatttcttaggaaggta |
46 |
Q |
| |
|
||||| ||||||||| || ||||||||||||||||||||||| |
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|
| T |
46183970 |
tggaagctagttcacaatgctcatcaatttcttaggaaggta |
46183929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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