View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9243_low_34 (Length: 240)
Name: NF9243_low_34
Description: NF9243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9243_low_34 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 49534714 - 49534938
Alignment:
| Q |
16 |
catctatatcataccttgatcaaatcaaagttgtagaacacaatgataggaataaaatgtggtattctttccatcctctacttctactacacatattgat |
115 |
Q |
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| T |
49534714 |
catctatatcataccttgatcaaatcaaagttgtagaacacaatgataggaataaaatgtggtattctttccatcctctacttctactacacatattgat |
49534813 |
T |
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| Q |
116 |
tgactacattactgcttaattcatgtattggttgacataggttagtcctaaatttgtatatgccattggcacgttgacacgtgttacataaatttgatgc |
215 |
Q |
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| T |
49534814 |
tgactacattactgcttaattcatgtattggttgacataggttagtcctaaatttgtatatgccattggcacgttgacacgtgttacataaatttgatgc |
49534913 |
T |
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| Q |
216 |
gtgcattctaaggcaaccacatgcc |
240 |
Q |
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| T |
49534914 |
gtgcattctaaggcaaccacatgcc |
49534938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 49108144 - 49108219
Alignment:
| Q |
66 |
aataaaatgtggtattctttccatcctctacttctactacacatattgattgactacattactgcttaattcatgtattggt |
147 |
Q |
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| T |
49108144 |
aataaaatgtgatattctttccatcctcta------ctacacagattgattgactggattaatgcttatttcatgtattggt |
49108219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 99 - 194
Target Start/End: Original strand, 38176327 - 38176422
Alignment:
| Q |
99 |
ctactacacatattgattgactacattactgcttaattcatgtattggttgacataggttagtcctaaatttgtatatgccattggcacgttgaca |
194 |
Q |
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| T |
38176327 |
ctactaaacatattgatcgactacattactgcttaattcatgtattggttgacataggttagtcctaaatttgtatatgtcatcggcacgttgaca |
38176422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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