View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9243_low_37 (Length: 237)

Name: NF9243_low_37
Description: NF9243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9243_low_37
NF9243_low_37
[»] chr7 (14 HSPs)
chr7 (1-222)||(4784726-4784947)
chr7 (1-222)||(4817155-4817376)
chr7 (3-219)||(4846915-4847131)
chr7 (3-219)||(4698084-4698300)
chr7 (3-171)||(4713008-4713176)
chr7 (3-219)||(4862895-4863111)
chr7 (3-208)||(4652526-4652731)
chr7 (3-208)||(4629915-4630120)
chr7 (12-130)||(4635872-4635990)
chr7 (1-210)||(4642708-4642917)
chr7 (3-208)||(4665941-4666146)
chr7 (1-210)||(4671644-4671853)
chr7 (28-210)||(4660835-4661017)
chr7 (60-133)||(27539502-27539575)
[»] chr4 (3 HSPs)
chr4 (3-209)||(18926643-18926849)
chr4 (49-134)||(45191491-45191576)
chr4 (60-133)||(46271740-46271813)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4784947 - 4784726
Alignment:
Q  1 ctttcaccatagtgctgacatgggtcatcgacatcccagtaggtcccacttttgataacccaaaatcagaaaccttagccacccatttctcatccaacaa 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4784947 ctttcaccatagtgctgacatgggtcatcgacatccctgtaggtcccacttttgataacccaaaatcagaaaccttagccacccatttttcatccaacaa 4784848  T
Q  101 tatgtttgtactctttacgtcacggtgtatgatattctgcttcgcacctgcatgcagataatgcaacccccgcgcggagcctaatagaatctcaagcctc 200  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  4784847 tatgtttgtactcttcacgtcacggtgtatgatattgtgcttcgcacctgcatgcagataatgcaacccccgcgcggcacctaatagaatctcaagcctc 4784748  T
Q  201 tgcttccaagtaagaggtttgt 222  Q
    |||||||| |||||||||||||    
T  4784747 tgcttccaggtaagaggtttgt 4784726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4817376 - 4817155
Alignment:
Q  1 ctttcaccatagtgctgacatgggtcatcgacatcccagtaggtcccacttttgataacccaaaatcagaaaccttagccacccatttctcatccaacaa 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4817376 ctttcaccatagtgctgacatgggtcatcgacatccctgtaggtcccacttttgataacccaaaatcagaaaccttagccacccatttttcatccaacaa 4817277  T
Q  101 tatgtttgtactctttacgtcacggtgtatgatattctgcttcgcacctgcatgcagataatgcaacccccgcgcggagcctaatagaatctcaagcctc 200  Q
    ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||    
T  4817276 tatgtttgtactcttcacatcacggtgtatgatattgtgcttcgcacctgcatgcaaataatgcaacccccgcgcggcacctaatagaatctcaagcctc 4817177  T
Q  201 tgcttccaagtaagaggtttgt 222  Q
    |||||||| |||||||||||||    
T  4817176 tgcttccaggtaagaggtttgt 4817155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 4847131 - 4846915
Alignment:
Q  3 ttcaccatagtgctgacatgggtcatcgacatcccagtaggtcccacttttgataacccaaaatcagaaaccttagccacccatttctcatccaacaata 102  Q
    |||||||||||||| ||||| ||||| || ||||| || |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  4847131 ttcaccatagtgcttacatgagtcattgatatcccggttggtcccacttttgataacccgaaatcagaaaccttagccacccatttttcatccaacaata 4847032  T
Q  103 tgtttgtactctttacgtcacggtgtatgatattctgcttcgcacctgcatgcagataatgcaacccccgcgcggagcctaatagaatctcaagcctctg 202  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||||| |||| ||||||| ||||||||  || |  |||||||||||||| || || ||    
T  4847031 tgtttgtactcttaacgtcacgatgtatgatattgtgcttcgcaccttcatgaagataattcaacccccttgctgcacctaatagaatctcgagtctttg 4846932  T
Q  203 cttccaagtaagaggtt 219  Q
     |||||  |||||||||    
T  4846931 attccacctaagaggtt 4846915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 4698300 - 4698084
Alignment:
Q  3 ttcaccatagtgctgacatgggtcatcgacatcccagtaggtcccacttttgataacccaaaatcagaaaccttagccacccatttctcatccaacaata 102  Q
    |||||| |||||||||| |||||||||||||| || || |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||    
T  4698300 ttcaccttagtgctgacgtgggtcatcgacattcctgttggtcccacttttgataacccgaaatcagaaaccttagccacccatttatcatctaacaata 4698201  T
Q  103 tgtttgtactctttacgtcacggtgtatgatattctgcttcgcacctgcatgcagataatgcaacccccgcgcggagcctaatagaatctcaagcctctg 202  Q
    |||| |||||||| || ||||||||||||||||| ||||||||||||||||| |||||||| |  || |  || |  || ||||||||||| || ||||     
T  4698200 tgttggtactcttcacatcacggtgtatgatattgtgcttcgcacctgcatgaagataatgtaggcctcttgctgcccccaatagaatctcgagtctctt 4698101  T
Q  203 cttccaagtaagaggtt 219  Q
    |||||||||||||||||    
T  4698100 cttccaagtaagaggtt 4698084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 171
Target Start/End: Complemental strand, 4713176 - 4713008
Alignment:
Q  3 ttcaccatagtgctgacatgggtcatcgacatcccagtaggtcccacttttgataacccaaaatcagaaaccttagccacccatttctcatccaacaata 102  Q
    |||||||||||||||||||| ||||| || ||||| || ||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||    
T  4713176 ttcaccatagtgctgacatgagtcattgatatccctgttggtcccacttttgataaaccgaaatcagaaaccttagccacccatttttcatccaacaata 4713077  T
Q  103 tgtttgtactctttacgtcacggtgtatgatattctgcttcgcacctgcatgcagataatgcaaccccc 171  Q
    | ||||||||||| |||||||||||||||||||| |||||||||||| |||| ||||||||||| ||||    
T  4713076 tatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatcccc 4713008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 3 - 219
Target Start/End: Original strand, 4862895 - 4863111
Alignment:
Q  3 ttcaccatagtgctgacatgggtcatcgacatcccagtaggtcccacttttgataacccaaaatcagaaaccttagccacccatttctcatccaacaata 102  Q
    |||||||  |||||||| || || || ||||| || || |||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||    
T  4862895 ttcaccacggtgctgacgtgagtgatagacattcctgttggtcccacttttgataacccgaaatcagacaccttagccacccatttttcatccaacaata 4862994  T
Q  103 tgtttgtactctttacgtcacggtgtatgatattctgcttcgcacctgcatgcagataatgcaacccccgcgcggagcctaatagaatctcaagcctctg 202  Q
    |||| |||||||| |||||||||||||||||||| |||||  |||| ||||| |||||||| |||||||  || |  || || ||||||||||| ||||     
T  4862995 tgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgcccccaacagaatctcaagtctctt 4863094  T
Q  203 cttccaagtaagaggtt 219  Q
    |||||||||||||||||    
T  4863095 cttccaagtaagaggtt 4863111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 4652526 - 4652731
Alignment:
Q  3 ttcaccatagtgctgacatgggtcatcgacatcccagtaggtcccacttttgataacccaaaatcagaaaccttagccacccatttctcatccaacaata 102  Q
    |||||||| ||||| ||||||||  | |||||||  || ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4652526 ttcaccatcgtgctaacatgggttgtagacatccttgtcggtcccactttcgataatccaaaatcagaaaccttagccacccatttctcatccaacaata 4652625  T
Q  103 tgtttgtactctttacgtcacggtgtatgatattctgcttcgcacctgcatgcagataatgcaacccccgcgcggagcctaatagaatctcaagcctctg 202  Q
    |||| || ||||| |||||||||||||| || || || ||| |  ||||||| ||||||| || ||| | |||||| || |||||||||||||||||||     
T  4652626 tgttggtgctcttcacgtcacggtgtattatcttgtgtttcacctctgcatgaagataattcagccctctcgcggaacccaatagaatctcaagcctctt 4652725  T
Q  203 cttcca 208  Q
    ||||||    
T  4652726 cttcca 4652731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 4629915 - 4630120
Alignment:
Q  3 ttcaccatagtgctgacatgggtcatcgacatcccagtaggtcccacttttgataacccaaaatcagaaaccttagccacccatttctcatccaacaata 102  Q
    |||||||| ||||||||||||||  |||  || || ||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||| ||    
T  4629915 ttcaccatcgtgctgacatgggtagtcgttattcctgtaggtcccaccttggataacccgaaatcagaaaccttagctacccatttctcatccaacagta 4630014  T
Q  103 tgtttgtactctttacgtcacggtgtatgatattctgcttcgcacctgcatgcagataatgcaacccccgcgcggagcctaatagaatctcaagcctctg 202  Q
    |||| || |||||||||||||| ||||| || || |||||| |  | | ||| ||||||| || ||| | ||| |  || ||||| ||||||||||||||    
T  4630015 tgttggtgctctttacgtcacgatgtattatcttgtgcttcacctcagaatgaagataattcagccctctcgctgcacccaataggatctcaagcctctg 4630114  T
Q  203 cttcca 208  Q
    ||||||    
T  4630115 cttcca 4630120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 4635872 - 4635990
Alignment:
Q  12 gtgctgacatgggtcatcgacatcccagtaggtcccacttttgataacccaaaatcagaaaccttagccacccatttctcatccaacaatatgtttgtac 111  Q
    |||||||| |||||  |||| || || || |||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||| || |    
T  4635872 gtgctgacgtgggtagtcgatatacctgtcggtcccacctttgataacccaaaatcagaaaccttagctatccatttctcatccaacaatatgttggtgc 4635971  T
Q  112 tctttacgtcacggtgtat 130  Q
    ||||||||||||| |||||    
T  4635972 tctttacgtcacgatgtat 4635990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 4642708 - 4642917
Alignment:
Q  1 ctttcaccatagtgctgacatgggtcatcgacatcccagtaggtcccacttttgataacccaaaatcagaaaccttagccacccatttctcatccaacaa 100  Q
    |||||||||| |||||||  |||||  |||| ||||| ||||||||||| || |||||||| || || ||||||||||| | |||||| |||||||||||    
T  4642708 ctttcaccattgtgctgatgtgggtagtcgatatccctgtaggtcccaccttggataacccgaagtcggaaaccttagctatccatttttcatccaacaa 4642807  T
Q  101 tatgtttgtactctttacgtcacggtgtatgatattctgcttcgcacctgcatgcagataatgcaacccccgcgcggagcctaatagaatctcaagcctc 200  Q
    |||||| || ||||| |||||||| ||||| || || |||||| |  | ||||| ||||||| || ||| |  ||||  ||||||||||| |||||||||    
T  4642808 tatgttggtgctcttcacgtcacgatgtattattttgtgcttcacctcagcatgaagataattcagccctcttgcggcacctaatagaatttcaagcctc 4642907  T
Q  201 tgcttccaag 210  Q
    ||| ||||||    
T  4642908 tgcctccaag 4642917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 4665941 - 4666146
Alignment:
Q  3 ttcaccatagtgctgacatgggtcatcgacatcccagtaggtcccacttttgataacccaaaatcagaaaccttagccacccatttctcatccaacaata 102  Q
    |||||||| ||||||||||||||  | || ||||| || |||||||| || ||||||||||| || |||||||| |||| |||||| |||||||||||||    
T  4665941 ttcaccatcgtgctgacatgggtagttgatatccctgtcggtcccaccttggataacccaaagtcggaaacctttgccatccatttttcatccaacaata 4666040  T
Q  103 tgtttgtactctttacgtcacggtgtatgatattctgcttcgcacctgcatgcagataatgcaacccccgcgcggagcctaatagaatctcaagcctctg 202  Q
    |||| || ||||| |||||||||||||| || ||||| ||| |  | | ||| ||||||| || ||| | ||| |  || || |||||||||||||||||    
T  4666041 tgttggtgctcttcacgtcacggtgtattatcttctgtttcacctcagtatgaagataattcagccctctcgctgcacccaaaagaatctcaagcctctg 4666140  T
Q  203 cttcca 208  Q
    ||||||    
T  4666141 cttcca 4666146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 4671644 - 4671853
Alignment:
Q  1 ctttcaccatagtgctgacatgggtcatcgacatcccagtaggtcccacttttgataacccaaaatcagaaaccttagccacccatttctcatccaacaa 100  Q
    |||||||||| |||||||| |||||  | |  ||||| || |||||||| || |||||||| || || ||||||||||| | ||||||||||||||||||    
T  4671644 ctttcaccattgtgctgacgtgggtagttgttatccccgtgggtcccaccttggataacccgaagtcggaaaccttagctatccatttctcatccaacaa 4671743  T
Q  101 tatgtttgtactctttacgtcacggtgtatgatattctgcttcgcacctgcatgcagataatgcaacccccgcgcggagcctaatagaatctcaagcctc 200  Q
    |||||| || ||||| |||||||| ||||| || || |||||| |  | ||||| |||||||  | ||| | ||| |  || ||||||||||||||||||    
T  4671744 tatgttggtgctcttcacgtcacgatgtattattttgtgcttcacctcagcatgaagataatttagccctctcgcagcacccaatagaatctcaagcctc 4671843  T
Q  201 tgcttccaag 210  Q
    ||| ||||||    
T  4671844 tgcctccaag 4671853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 4660835 - 4661017
Alignment:
Q  28 tcgacatcccagtaggtcccacttttgataacccaaaatcagaaaccttagccacccatttctcatccaacaatatgtttgtactctttacgtcacggtg 127  Q
    |||| ||||| || |||||||| || |||||||| || || ||||||||||| |||||||| | ||||||||||||||| || ||||||||||| |||||    
T  4660835 tcgatatccctgtcggtcccaccttggataacccgaagtcggaaaccttagctacccatttgtgatccaacaatatgttggtgctctttacgtcgcggtg 4660934  T
Q  128 tatgatattctgcttcgcacctgcatgcagataatgcaacccccgcgcggagcctaatagaatctcaagcctctgcttccaag 210  Q
    ||| || || || ||| |  | ||||| |||||||||||||| |  || || || ||||| ||||||||||| ||| ||||||    
T  4660935 tattattttgtgtttcacctcagcatgaagataatgcaaccctcttgctgaacccaataggatctcaagcctttgcctccaag 4661017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 27539575 - 27539502
Alignment:
Q  60 ccaaaatcagaaaccttagccacccatttctcatccaacaatatgtttgtactctttacgtcacggtgtatgat 133  Q
    ||||||||||||||||| |||||||| |||||||| |  || ||||||||| |||| || |||||||| |||||    
T  27539575 ccaaaatcagaaaccttggccacccacttctcatctagtaaaatgtttgtagtcttcacatcacggtggatgat 27539502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 18926849 - 18926643
Alignment:
Q  3 ttcaccatagtgctgacatgggtcatcgacatcccagtaggtcccacttttgataacccaaaatcagaaaccttagccacccatttctcatccaacaata 102  Q
    |||||||| ||||||||||||||  | || ||||| || |||||||| || |||||||| || || ||||||||||||||||||||||||||||| ||||    
T  18926849 ttcaccattgtgctgacatgggtagttgatatccccgttggtcccaccttggataacccgaagtcggaaaccttagccacccatttctcatccaataata 18926750  T
Q  103 tgtttgtactctttacgtcacggtgtatgatattctgcttcgcacctgcatgcagataatgcaacccccgcgcggagcctaatagaatctcaagcctctg 202  Q
    |||| || || || || ||||| ||||| || || || ||| |  | ||||| ||||||| || ||| |  ||||  || |||| |||||||||||| ||    
T  18926749 tgttggtgcttttcacatcacgatgtattatcttgtgtttcacctcagcatgaagataattcagccctcttgcggcacccaatacaatctcaagcctttg 18926650  T
Q  203 cttccaa 209  Q
    |||||||    
T  18926649 cttccaa 18926643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 45191576 - 45191491
Alignment:
Q  49 cttttgataacccaaaatcagaaaccttagccacccatttctcatccaacaatatgtttgtactctttacgtcacggtgtatgata 134  Q
    |||| ||||| ||||||||||||||||| || ||  | ||||||||||| | ||| |||||  |||| ||||||||||||||||||    
T  45191576 ctttagataaaccaaaatcagaaaccttggcaacataattctcatccaagagtatatttgttgtcttcacgtcacggtgtatgata 45191491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 46271813 - 46271740
Alignment:
Q  60 ccaaaatcagaaaccttagccacccatttctcatccaacaatatgtttgtactctttacgtcacggtgtatgat 133  Q
    ||||||||||||||||| |||||||| |||||||| |  || ||||||||| |||| || |||||||| |||||    
T  46271813 ccaaaatcagaaaccttggccacccacttctcatctagtaaaatgtttgtagtcttcacatcacggtggatgat 46271740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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