View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9243_low_41 (Length: 213)
Name: NF9243_low_41
Description: NF9243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9243_low_41 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 209
Target Start/End: Complemental strand, 6417356 - 6417159
Alignment:
| Q |
12 |
catcaccaaccgaattcgattcacactgactatcctcaatccaacacgccctttcctttgtcgcctctttaaaagattcacaaaccttaattccctcaac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6417356 |
catcaccaaccgaattcgattcacactgactatcctcaatccaacacgccctttcctttgtcgcctctttaaaagattcacaaaccttaattccctcaac |
6417257 |
T |
|
| Q |
112 |
ctcacacgctttcatggtgaccttgatgctcttctccgtaaaatctctcgttttccatcattgaacatcacatcacttaatatctccaacaaacccac |
209 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6417256 |
ctcacacgctttcatggcgaccttgatgctcttctccgtaaaatctctcgttttccatcattgaacatcacatcacttaatatctccaaccaacccac |
6417159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 7993412 - 7993527
Alignment:
| Q |
83 |
aaagattcacaaaccttaattccctcaacctcacacgctttcatggtgaccttgatgctcttctccgtaaaatctctcgttttccatcattgaacatcac |
182 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| | || ||| |||||||||| |||| || |||||||| ||| ||||||||||||||||| |
|
|
| T |
7993412 |
aaagattcactaaccttaactccctcaacctctcgaactaccattgtgaccttgacaagtttctgcgggaaatctctactttcccatcattgaacatcac |
7993511 |
T |
|
| Q |
183 |
atcacttaatatctcc |
198 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
7993512 |
atcccttaatatctcc |
7993527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 6602562 - 6602616
Alignment:
| Q |
54 |
aacacgccctttcctttgtcgcctctttaaaagattcacaaaccttaattccctc |
108 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| |||||| |||| ||||||||| |
|
|
| T |
6602562 |
aacacgcccttttcttgatcgcctctttaaaaggttcacatacctcaattccctc |
6602616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 209
Target Start/End: Complemental strand, 10615977 - 10615780
Alignment:
| Q |
12 |
catcaccaaccgaattcgattcacactgactatcctcaatccaacacgccctttcctttgtcgcctctttaaaagattcacaaaccttaattccctcaac |
111 |
Q |
| |
|
|||||||||||| || || ||| |||| |||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10615977 |
catcaccaaccggatccggttctcactcactatcttcaatccaacacgccctttcctttgcctcctctttaaaagattcacaaaccttaattccctcaac |
10615878 |
T |
|
| Q |
112 |
ctcacacgctttcatggtgaccttgatgctcttctccgtaaaatctctcgttttccatcattgaacatcacatcacttaatatctccaacaaacccac |
209 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
10615877 |
ctcacacgcttccacggtgaccttgacgctcttctccgcaaaatctctcgtttcccatcattgaacatcacatcacttaatatttccaaccaacccac |
10615780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 35 - 209
Target Start/End: Original strand, 13469464 - 13469638
Alignment:
| Q |
35 |
cactgactatcctcaatccaacacgccctttcctttgtcgcctctttaaaagattcacaaaccttaattccctcaacctcacacgctttcatggtgacct |
134 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
13469464 |
cactcactatcctcaatccaacacaccctttcctttgtcgcctctttaaaagattcacaaaccttaattcactcaacctcacacgcttccatggggacct |
13469563 |
T |
|
| Q |
135 |
tgatgctcttctccgtaaaatctctcgttttccatcattgaacatcacatcacttaatatctccaacaaacccac |
209 |
Q |
| |
|
||| ||||||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
13469564 |
tgacgctcttctccgcaaaatctctcgcttctcatcattgaacatcacatcacttaatctctccaaccaacccac |
13469638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 213
Target Start/End: Original strand, 21833083 - 21833270
Alignment:
| Q |
26 |
ttcgattcacactgactatcctcaatccaacacgccctttcctttgtcgcctctttaaaagattcacaaaccttaattccctcaacctcacacgctttca |
125 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| || | ||| |||||| ||||||||||| ||||||| ||||| |||||| | ||||| || |
|
|
| T |
21833083 |
ttcgattatcactgactgtcctcaatccaacacgccctctcatccgtcccctcttcaaaagattcaccaaccttacctcccttaacctctctcgcttcca |
21833182 |
T |
|
| Q |
126 |
tggtgaccttgatgctcttctccgtaaaatctctcgttttccatcattgaacatcacatcacttaatatctccaacaaacccaccatt |
213 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
21833183 |
cggtgacctcaacaaccttctccgtcaaatctctcgtttcccatcattgaacatcaagtcactcaatatctccaacaaacccaccatt |
21833270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 10633790 - 10633847
Alignment:
| Q |
128 |
gtgaccttgatgctcttctccgtaaaatctctcgttttccatcattgaacatcacatc |
185 |
Q |
| |
|
||||||| |||||||||||| | |||||| | ||||||||||||||||||||||||| |
|
|
| T |
10633790 |
gtgacctcgatgctcttctcattcaaatctattgttttccatcattgaacatcacatc |
10633847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University