View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9243_low_44 (Length: 203)
Name: NF9243_low_44
Description: NF9243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9243_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 42519255 - 42519087
Alignment:
| Q |
20 |
gtttacgctaagcagctaaacattaagcctgcagataatcaatactgcaaattcgacagtcagacactaactctgtttacatcctctttgtatttggccg |
119 |
Q |
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| T |
42519255 |
gtttatgctaagcagctaaacattaagcctgcagataatcaatactgcaaattcgacagtcagacactaactctgtttacatcctctttgtatttggccg |
42519156 |
T |
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| Q |
120 |
ctcttgtggcttctcttggagcatccaccgtaactagaatctttggaagacgtcttaccatgctctctg |
188 |
Q |
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| T |
42519155 |
ctcttgtggcttctcttggagcatccactgtaactagaatctttggaagacgtcttaccatgctctctg |
42519087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 1241034 - 1240866
Alignment:
| Q |
20 |
gtttacgctaagcagctaaacattaagcctgcagataatcaatactgcaaattcgacagtcagacactaactctgtttacatcctctttgtatttggccg |
119 |
Q |
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||||| |||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1241034 |
gtttaggctaaggagctaaacattaagcctaccgataatcaatactgcaaattcgacagtcagacactaacgttgtttacatcctctttgtatttggccg |
1240935 |
T |
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| Q |
120 |
ctcttgtggcttctcttggagcatccaccgtaactagaatctttggaagacgtcttaccatgctctctg |
188 |
Q |
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| T |
1240934 |
ctcttgtggcttctcttggagcatccaccgcaactagaatctttggaagacatcttaccatgctctctg |
1240866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 42550903 - 42550991
Alignment:
| Q |
93 |
tgtttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccaccgtaactagaatctttggaagacgtcttaccatg |
181 |
Q |
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| T |
42550903 |
tgtttacctcctctttgtatttggctgctcttgtagcatcacttggggcatccacagtaactcgatcgtttggaaggcgtctcaccatg |
42550991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 41972666 - 41972499
Alignment:
| Q |
20 |
gtttacgctaagcagctaaacattaagcctgcagataatcaatactgcaaattcgacagtcagacactaactctgtttacatcctctttgtatttggccg |
119 |
Q |
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||||| |||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
41972666 |
gtttaggctaaggagctaaacattaagcctacggataatcaatactgcaaattcgacagtcagacactacgt-tgtttacatcctctttgtatttggccg |
41972568 |
T |
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| Q |
120 |
ctcttgtggcttctcttggagcatccaccgtaactagaatctttggaagacgtcttaccatgctctctg |
188 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41972567 |
ctcttgtggattctcttggagcatccaccgtaactagaatctttggaagacgtcttaccatgctctctg |
41972499 |
T |
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