View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9243_low_9 (Length: 599)
Name: NF9243_low_9
Description: NF9243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9243_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 486; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 20 - 586
Target Start/End: Complemental strand, 11603936 - 11603369
Alignment:
| Q |
20 |
cttaacaaagatcaacagtttgaatttgaaagttgcacttttgatgcagttttgtgcactgttagtgtgcagtatctgcaacaaccagagaagtttagcc |
119 |
Q |
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| T |
11603936 |
cttaacaaagatcaacagtttgaatttgaaagttgcacttttgatgcagttttgtgcactgttagtgtgcagtatctccaacaaccagagaaggtcaga- |
11603838 |
T |
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| Q |
120 |
tatattttatgacctcata--attttccaaaccttatctattgtcaatctcaaatctcaatgttactttttcttaggttttggtaggttactaaaactat |
217 |
Q |
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| T |
11603837 |
tatattctatgacatcatataattttccaaaccttatctattgtcaatctcaaatctcaatgttactttttcttaggttttggtaggttactaaaactat |
11603738 |
T |
|
| Q |
218 |
agagaaatttcaaacagttaatcgaaggagtaaatagtcggtcttgaatgtttcaagtattttcaataatatagaccttgaatgtatcaaaattataaaa |
317 |
Q |
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| T |
11603737 |
agagaaatttcaaacagttaatcgaaggagtaaatagtcggtcttgaatgtttcaagcattttcaataatatagaccttgaatgtatcaaaattataaaa |
11603638 |
T |
|
| Q |
318 |
gtatcccggagtctttctttttgacgtgtttttcattgggcagtttggtccacaaacatgtcttctgttagtcagtttagtccatgatattactagcaaa |
417 |
Q |
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| T |
11603637 |
gtatcctgaagtctttctttttgacgtgtttttcattggccagtttggtccacaaacatgtcttctgttagtcagtttagtccatgatattactagcaaa |
11603538 |
T |
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| Q |
418 |
agacacattcatggatgtttttgtaatttcagtatattttgattgtaataacatcgcatcatacataaatatgaacaaaaatgacaatttagtctgatca |
517 |
Q |
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| T |
11603537 |
agacacactcatggatatttttgtaatttcagtatattttgattgtaataacatcgcatcatacataaatatgaaccaaaatgacaatttagtctgatca |
11603438 |
T |
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| Q |
518 |
aatgtgtctcactctcatgtgacctcaaccacagttgctttttggcaaaaacataaacaatttgatgtc |
586 |
Q |
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| T |
11603437 |
aacgtgtctcactctcatgtgacctcaaccacagttgctttgtcgcaaaaacataaacaatttgatgtc |
11603369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 424
Target Start/End: Complemental strand, 107560 - 107495
Alignment:
| Q |
359 |
agtttggtccacaaacatgtcttctgttagtcagtttagtccatgatattactagcaaaagacaca |
424 |
Q |
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| T |
107560 |
agtttggtcaccaaatgtgtcttttgttagtcattttagtccataaaattactaacaaaagacaca |
107495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 448
Target Start/End: Complemental strand, 5711233 - 5711169
Alignment:
| Q |
384 |
gttagtcagtttagtccatgatattactagcaaaagacacattcatggatgtttttgtaatttca |
448 |
Q |
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| T |
5711233 |
gttagtcagtttagtctatgaaaatactaacaaaagtcacactcatggatgtttttgcaatttca |
5711169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 397
Target Start/End: Original strand, 29931076 - 29931114
Alignment:
| Q |
359 |
agtttggtccacaaacatgtcttctgttagtcagtttag |
397 |
Q |
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| T |
29931076 |
agtttggtccacaaatatgtcttttgttagtcagtttag |
29931114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 448
Target Start/End: Complemental strand, 14012732 - 14012643
Alignment:
| Q |
359 |
agtttggtccacaaacatgtcttctgttagtcagtttagtccatgatattactagcaaaagacacattcatggatgtttttgtaatttca |
448 |
Q |
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|||||||||| |||| || |||| ||||||||||||||||||| || |||||| |||| | ||| | | ||||||||||||| ||||| |
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| T |
14012732 |
agtttggtcctcaaatatctcttttgttagtcagtttagtccaagaagttactaaaaaaatatacactgagggatgtttttgtattttca |
14012643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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