View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9244_high_1 (Length: 710)
Name: NF9244_high_1
Description: NF9244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9244_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 3e-87; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 30 - 205
Target Start/End: Complemental strand, 8131498 - 8131323
Alignment:
| Q |
30 |
gagagacttcttttgatccataatgaacttcttcaaaaccttagatatgtagtccttttggttgatgaataaggttatcttggatttataccttgtgata |
129 |
Q |
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| T |
8131498 |
gagagacttcttttgatccataatgaacttcttcaaaaccttatatatgtagtccttttggttgatgaataaggttatcttggatttataccttgtgatc |
8131399 |
T |
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| Q |
130 |
tgcataaccataatctttttagcaccccacatattcttcatttcaatctaactctcaagattcatctttaccttct |
205 |
Q |
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| T |
8131398 |
tgcataaccataatctttttagcaccccacgtattcttcatttcaatctaactctcaagattcatctttaccttct |
8131323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 462 - 592
Target Start/End: Complemental strand, 8131134 - 8130998
Alignment:
| Q |
462 |
tttgcttcaccaagtgcctcttcgatctcctgttggaccatgaacaccctc------gtcttcattttccgtaggctgaaatcattattgtctatgcatt |
555 |
Q |
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| T |
8131134 |
tttgcttcaccaagtgcctcttcgatctcctgttggaccatgaacaccctcaccctcgtcttcattttccgcaggctgaaatcattattgtctatgcatt |
8131035 |
T |
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| Q |
556 |
tctcgatattgaaattcgcagatttgtagagtaagcc |
592 |
Q |
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| T |
8131034 |
tctcgatattgaaattcgcagagatgtagagtaagcc |
8130998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 642 - 697
Target Start/End: Complemental strand, 8130947 - 8130892
Alignment:
| Q |
642 |
gtagtggaatatcgttacattggcgatgatttatcgtgacataggcatatcaagtg |
697 |
Q |
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| T |
8130947 |
gtagtggaatatcgttacattggcgatgatttatggtgacatagacatatcaagtg |
8130892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 417 - 462
Target Start/End: Complemental strand, 8131230 - 8131185
Alignment:
| Q |
417 |
gagccaaatcgtagaagcaatcttcctcttcgaatcaaggcattat |
462 |
Q |
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| T |
8131230 |
gagccaaatcgtagaaccaatcttcctcttcgaatcaaggcattat |
8131185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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