View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9244_high_5 (Length: 239)
Name: NF9244_high_5
Description: NF9244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9244_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 44786490 - 44786723
Alignment:
| Q |
1 |
aaaacaaaaacaaaacccaatggaatttcccatccaatctttt----------gaatcatggacgaagagggagttttctacctcaaatatgtcataatt |
90 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44786490 |
aaaacaaaaacaaaacccaacggaatttcccatccaatcttttatagttttttgaatcatggacgaagagggagttttctacctcaaatatgtcataatt |
44786589 |
T |
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| Q |
91 |
cctcttctatacttcattctcagtttcacattttactgataaagggtatatatttggtatgacgcccctgagcaaaaatttagccagnnnnnnncttcct |
190 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
44786590 |
cctcttctatactttattctcagtttcacattttactgataaagggtatatatttggtatgacgcccctgagcaaaaatttggccagtttttttcttcct |
44786689 |
T |
|
| Q |
191 |
taactccacgcttataacagctatagtctttcct |
224 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
44786690 |
taactccacgcttataacagctatagtctttcct |
44786723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 211
Target Start/End: Original strand, 44788234 - 44788388
Alignment:
| Q |
57 |
agagggagttttctacctcaaatatgtcataattcctcttctatacttcattctcagtttcacattttactgataaagggtatatatttggtatgacgcc |
156 |
Q |
| |
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|||||||||||||||||||||| | || || | ||||||| | || ||||||||||||||||||| ||||||||| ||||||||||||||||| | |
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| T |
44788234 |
agagggagttttctacctcaaaagtttcgtatatgctcttctgtcatttgttctcagtttcacattttagtgataaaggaaatatatttggtatgacgtc |
44788333 |
T |
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| Q |
157 |
cctgagcaaaaatttagccagnnnnnnncttccttaactccacgcttataacagc |
211 |
Q |
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| T |
44788334 |
cctgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagc |
44788388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 224
Target Start/End: Original strand, 44791973 - 44792089
Alignment:
| Q |
108 |
tctcagtttcacattttactgataaagggtatatatttggtatgacgcccctgagcaaaaatttagccagnnnnnnncttccttaactccacgcttataa |
207 |
Q |
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|||| ||||||||||||||| | |||||| |||||||||||||||||||| |||||||||| || |||| |||| | ||||||||||||| || |
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| T |
44791973 |
tctcggtttcacattttacttacaaagggaatatatttggtatgacgcccttgagcaaaaacttgtccagtctttttcttcttgaactccacgcttacaa |
44792072 |
T |
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| Q |
208 |
cagctatagtctttcct |
224 |
Q |
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|||||| || ||||||| |
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| T |
44792073 |
cagctacagcctttcct |
44792089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 44799934 - 44800035
Alignment:
| Q |
115 |
ttcacattttactgataaagggtatatatttggtatgacgcccctgagcaaaaatttagccagnnnnnnncttccttaactccacgcttataacagctat |
214 |
Q |
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||||||||||||||| |||||| | ||| |||||||||||||| ||||||||||||| ||| | |||||| ||||| ||||||| ||||||||| |
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| T |
44799934 |
ttcacattttactgacaaagggaagatacttggtatgacgcccttgagcaaaaatttggcccgtctttttcttcctgaactctacgcttacaacagctat |
44800033 |
T |
|
| Q |
215 |
ag |
216 |
Q |
| |
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|| |
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| T |
44800034 |
ag |
44800035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 224
Target Start/End: Original strand, 44783654 - 44783770
Alignment:
| Q |
108 |
tctcagtttcacattttactgataaagggtatatatttggtatgacgcccctgagcaaaaatttagccagnnnnnnncttccttaactccacgcttataa |
207 |
Q |
| |
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|||||||||||||||||||| ||| || | |||| |||||||||| || |||||||||| || ||||| |||||| ||||||| ||||| || |
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| T |
44783654 |
tctcagtttcacattttactagtaatggaaagatatgtggtatgacgtccatgagcaaaaacttggccagtctttttcttcctaaactccatgcttacaa |
44783753 |
T |
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| Q |
208 |
cagctatagtctttcct |
224 |
Q |
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|||||||| ||||||| |
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| T |
44783754 |
cagctataacctttcct |
44783770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 44796902 - 44796984
Alignment:
| Q |
142 |
atttggtatgacgcccctgagcaaaaatttagccagnnnnnnncttccttaactccacgcttataacagctatagtctttcct |
224 |
Q |
| |
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|||| ||||||||||| |||||||||| || ||||| |||||| ||||||||||||| |||||||| || ||||||| |
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| T |
44796902 |
attttgtatgacgcccttgagcaaaaacttggccagtttttttcttcctcaactccacgcttagaacagctacagcctttcct |
44796984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 57 - 171
Target Start/End: Complemental strand, 36681467 - 36681354
Alignment:
| Q |
57 |
agagggagttttctacctcaaatatgtcataattcctcttctatacttcattctcagtttcacattttactgataaagggtatatatttggtatgacgcc |
156 |
Q |
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|||||||||||||||||||||| || || || ||||||||| | ||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36681467 |
agagggagttttctacctcaaa-atttcgtatatcctcttctgtcctttgttctcagtttcacattttactgataaagggaatatatttggtatgacgcc |
36681369 |
T |
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| Q |
157 |
cctgagcaaaaattt |
171 |
Q |
| |
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|| |||||||||||| |
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| T |
36681368 |
cccgagcaaaaattt |
36681354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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