View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9244_low_10 (Length: 361)
Name: NF9244_low_10
Description: NF9244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9244_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 47074207 - 47074539
Alignment:
| Q |
16 |
tgttcattaggcaagatagtgataatatcacaccaagttactcagaaccaaaaaagaagttaaaaaattgtagggtgttcattagcgattgatttcatta |
115 |
Q |
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| T |
47074207 |
tgttcattaggcaagatagtgataatatcacaccaagttactcagaaccaaaaaagaagttaaaaaattgtagggtgttcattagcgattgatttcatta |
47074306 |
T |
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| Q |
116 |
tgtttcacaagttgatgatnnnnnnngttggaatcttccattgacaagtatcatatcaagcttaccttttgatatgaatttaaccgaccagataaatcca |
215 |
Q |
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| T |
47074307 |
tgtttcacaagttgatgattaaaaaagttggaatcttccattgacaagtatcatattaagcttaccttttgatatgaatttaaccgaccagataaatcca |
47074406 |
T |
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| Q |
216 |
tgtaatgcaaagaatctggctgttgaggatttccatttgaagctggacacatagcgaagcacttaacaaactacagatatgaaattagtactattattca |
315 |
Q |
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| T |
47074407 |
tgtaatgcaaagaatctggctgttgaggatttccatttgaagctggacacatagtgaagcacttaacaaactacagatatgaaattagtactattattca |
47074506 |
T |
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| Q |
316 |
ccttagtcaatagaaaaatagctacttaccagt |
348 |
Q |
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| T |
47074507 |
ccttagtcaatagaaaaatagctacttaccagt |
47074539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 169 - 308
Target Start/End: Original strand, 47056387 - 47056526
Alignment:
| Q |
169 |
tatcaagcttaccttttgatatgaatttaaccgaccagataaatccatgtaatgcaaagaatctggctgttgaggatttccatttgaagctggacacata |
268 |
Q |
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| T |
47056387 |
tatcaatcttaccttttggtatgaatttaaccgaccagattcatcgatgtaatgcaaagaatctgacttttgaggatctccatttgaagctgaaaaaaca |
47056486 |
T |
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| Q |
269 |
gcgaagcacttaacaaactacagatatgaaattagtacta |
308 |
Q |
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| T |
47056487 |
ttgaagcttttcacaaactacaaagatgaaattagtacta |
47056526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 169 - 330
Target Start/End: Complemental strand, 18231046 - 18230881
Alignment:
| Q |
169 |
tatcaagcttaccttttgatatgaatttaaccgaccagataaatccatgtaatgcaaagaatctggctgttgaggatttccatttgaagctggac----a |
264 |
Q |
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| T |
18231046 |
tatcaagcttaccttttggtatgaatttaaccgaccggataaatcgatgtaatgcaaagaatctggctgttgaggacttccgtttgaagctggacatata |
18230947 |
T |
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| Q |
265 |
catagcgaagcacttaacaaactacagatatgaaattagtactattattcaccttagtcaatagaa |
330 |
Q |
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| T |
18230946 |
tatattgaagctattaacaaactacaaatatgaaattagtactattattgaccttaattaatagaa |
18230881 |
T |
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Back To:
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