View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9244_low_3 (Length: 644)
Name: NF9244_low_3
Description: NF9244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9244_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 6 - 628
Target Start/End: Original strand, 42507536 - 42508158
Alignment:
| Q |
6 |
gtttggtgttgtttcgtcatcttatggtgcttctgactctgaattgctcctcaaggtaaaggacaatcttgnnnnnnnccccgaggtattgtcaacatgg |
105 |
Q |
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| T |
42507536 |
gttttgtgttgtttcgtcatcttatggcgcttctgactctgaattgctcctcaaggtaaaggacaatcttgaaaaaaaacctgaggtgttgtcaacatgg |
42507635 |
T |
|
| Q |
106 |
aacacatcaaccacaccttgtaatggcgatcatgccaattggcgcggcattctttgttatcaaggaaaggtttggggatcgaagcttgagaatatggggc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
42507636 |
aacacatcaaccacaccttgtaatggcgatcatgccaattggcgtggcgttctttgttatcaaggaaaagtttggggattgaagcttgagaatatggggc |
42507735 |
T |
|
| Q |
206 |
taaaaggtttcattgatgtgaattctcttagggagttaccatatcttagaacccttagtttcatgaataatgattttgagggtggttggcctgagattaa |
305 |
Q |
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| T |
42507736 |
taaaaggtttcattgatgtgaattctcttagggagttaccatatcttagaacccttagtttcatgaataatgattttgagggtggttggcctgagattaa |
42507835 |
T |
|
| Q |
306 |
taaactttttggtcttaaatcgctctatttgtcaaataacaaattttctggagaggttccttgggaagcttttgacggtatgcagtggttaaagaaaatt |
405 |
Q |
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|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42507836 |
taaactttttggtcttaaatcgctttatctgtcaaataacaaattttctggagaggttccttgggaagcttttgacggtctgcagtggttaaagaaaatt |
42507935 |
T |
|
| Q |
406 |
catttgtcaaataatcagtttacaggtcctattccatcttctctgagtttgatgccaaagcttatggatttgagattggatggaaacaaattcactggac |
505 |
Q |
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| T |
42507936 |
catttgtcaaataatcagtttacaggtcctattccatcttctctgagtttgatgccaaagcttatggatttgagattggatggaaacaaattcactggac |
42508035 |
T |
|
| Q |
506 |
ctattcctaaattttcaacagattccaaattgaaaacattcaatgtagctaataatcagttgcagggaccaataccagccgctcttagtaaaatccccgc |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42508036 |
ctattcctaaattttcaacagattccaaattgaaaacattcaatgtagctaataatcagttgcagggaccaataccagccgctcttagtaaaatccccgc |
42508135 |
T |
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| Q |
606 |
ttcttccttttccggtgagtaac |
628 |
Q |
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||||||||||||||||||||||| |
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| T |
42508136 |
ttcttccttttccggtgagtaac |
42508158 |
T |
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