View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9244_low_5 (Length: 602)
Name: NF9244_low_5
Description: NF9244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9244_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 440; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 107 - 583
Target Start/End: Original strand, 1890474 - 1890950
Alignment:
| Q |
107 |
agcaaagtacaatgggagtatataaacagtttcttaaataatataccaacttttaatacaaccaaccaacttttatctttcatttcagtttatggtccaa |
206 |
Q |
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| T |
1890474 |
agcaaagtacaatgggagtatataaacagtttcttaaataatataccaacttttaatacaaccaaccaacttttatctttcatttcagtttatggtccaa |
1890573 |
T |
|
| Q |
207 |
acctcatcatgaaaaacatctcacagaaattctgaacttcagcagaatttgtgattgttgtgtaactgatagaacttagaagtcagagaaaatatgacaa |
306 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1890574 |
acctcatcatgaaaaacatctcatagaaattctgaacttcagcagaatttgtgattgttgtgtaactgatagaacttagaagtcagagaaaatatgagaa |
1890673 |
T |
|
| Q |
307 |
gaagatggtcattttacaaggatgttttgccacctgtggtgatcataggacaggaaactattgaaatggctttactcactttgttcaaagcagccacact |
406 |
Q |
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| T |
1890674 |
gaagatggtccttttacaaggatgttttgccacctgtggtgatcataggacaggaaactattgaaatggctttactcactttgttcaaagcagccacact |
1890773 |
T |
|
| Q |
407 |
tcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcacnnnnnnnagaagaaggtaagtttgtcag |
506 |
Q |
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| T |
1890774 |
tcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcactttttttagaagaaggtaagtttgtcag |
1890873 |
T |
|
| Q |
507 |
aatcacggtgttagaacaacatatgtatataacaacttagtacatgtttagattgacggtaaatttgtcaggttcat |
583 |
Q |
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| T |
1890874 |
aatcacggtgttagaacaacatatgtatacaacaacttagtacatgtttagattgacggtaaatttgtcaggttcat |
1890950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 300 - 478
Target Start/End: Original strand, 1895517 - 1895695
Alignment:
| Q |
300 |
atgacaagaagatggtcattttacaaggatgttttgccacctgtggtgatcataggacaggaaactattgaaatggctttactcactttgttcaaagcag |
399 |
Q |
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||||||||||||||||| ||||||| ||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1895517 |
atgacaagaagatggtccttttacatggatgttttgccaattttagtgatcataggacaggaaactattgaaatggctttactcactttgttcaaagcag |
1895616 |
T |
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| Q |
400 |
ccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcac |
478 |
Q |
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| T |
1895617 |
ccacaaatcaagggatgaacaaccatgtctttgttgcttattcttatgctgttggtacttctgttcttcttcctgtcac |
1895695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 235 - 522
Target Start/End: Original strand, 1883959 - 1884245
Alignment:
| Q |
235 |
attctgaacttcagcagaatttgtgattgttgtgtaactgatagaacttagaagtcagagaaaatatgacaagaagatggtcattttacaaggatgtttt |
334 |
Q |
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| T |
1883959 |
attctgaacttcaacaaggtttgtgattgttgtatataggataaaacttagaacacatagaaag-atgacaagaaaacggtccttttacatggattttct |
1884057 |
T |
|
| Q |
335 |
gccacctgtggtgatcataggacaggaaactattgaaatggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgtt |
434 |
Q |
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| T |
1884058 |
gccacctgttgtgattataggcaatgaatgtgttgacatggctttactgactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttgtt |
1884157 |
T |
|
| Q |
435 |
gcctatgcttatgctattggtactgctattctccttcctatcacnnnnnnnagaagaaggtaagtttgtcagaatcacggtgttagaa |
522 |
Q |
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| T |
1884158 |
gcctatgcttatgctgttgcaacttcttttctccttcctatcactttttttagaagaaggtaagtttgacagaatcacgacgttagaa |
1884245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 254 - 458
Target Start/End: Original strand, 1910928 - 1911131
Alignment:
| Q |
254 |
tttgtgattgttgtgtaactgatagaacttagaagtcagagaaaatatgacaagaagatggtcattttacaaggatgttttgccacctgtggtgatcata |
353 |
Q |
| |
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|||||||||||||||||||||| ||||| ||||||| | ||||| ||||||||||||||||| || |||| ||||||| ||||||||| ||||| ||| |
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| T |
1910928 |
tttgtgattgttgtgtaactgaaagaacatagaagtgacagaaac-atgacaagaagatggtccttgtacatggatgttctgccacctgctgtgattata |
1911026 |
T |
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| Q |
354 |
ggacaggaaactattgaaatggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattg |
453 |
Q |
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| | ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||| ||| |
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| T |
1911027 |
tgctatgaatgtattgacatggctttactcactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttattgcttatgcttatgctgttg |
1911126 |
T |
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| Q |
454 |
gtact |
458 |
Q |
| |
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||||| |
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| T |
1911127 |
gtact |
1911131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 300 - 455
Target Start/End: Original strand, 1901928 - 1902083
Alignment:
| Q |
300 |
atgacaagaagatggtcattttacaaggatgttttgccacctgtggtgatcataggacaggaaactattgaaatggctttactcactttgttcaaagcag |
399 |
Q |
| |
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|||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| | ||| | ||| |||||||||||||||||||||||||| | |
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| T |
1901928 |
atgacaagaagatggtcactttacatggatgttttgccacctgtggtgattataggcaatgaatgttctgacatggctttactcactttgttcaaagctg |
1902027 |
T |
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| Q |
400 |
ccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggt |
455 |
Q |
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|||||||||||||||||||| ||||||||| |||| |||||||||||| ||||| |
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| T |
1902028 |
taacacttcaagggatgaacaaccatgtctttattgcttatgcttatgctgttggt |
1902083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 373 - 478
Target Start/End: Original strand, 1878084 - 1878189
Alignment:
| Q |
373 |
tggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcc |
472 |
Q |
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|||||||| ||| ||| | |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| || |||||||||| |
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| T |
1878084 |
tggctttagtcattttatacaaagcagccacacttcaagggatgaacaactatgtttttgttgcctatgcttatgctgttggtacttctgttctccttcc |
1878183 |
T |
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| Q |
473 |
tatcac |
478 |
Q |
| |
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|||||| |
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|
| T |
1878184 |
tatcac |
1878189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 421
Target Start/End: Original strand, 11537528 - 11537577
Alignment:
| Q |
372 |
atggctttactcactttgttcaaagcagccacacttcaagggatgaacaa |
421 |
Q |
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|||| ||| |||||||||||||||||||| |||| |||||||||||||| |
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| T |
11537528 |
atgggtttgctcactttgttcaaagcagcaccactgcaagggatgaacaa |
11537577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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