View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9245_low_11 (Length: 291)
Name: NF9245_low_11
Description: NF9245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9245_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 27496625 - 27496357
Alignment:
| Q |
19 |
actcttgtccaacccttgggaaggtgctgcatagaatatccaaaccggccaaaagggtatatattccttctaggaagtgacaaattttaattttttgtaa |
118 |
Q |
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| T |
27496625 |
actcttgtccaacccttgggaaggtgctgcatggattatccaaaccggccaaaagggtatatattccttctaggaagtgacaaattttgattttttgtga |
27496526 |
T |
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| Q |
119 |
aggaaaataaatattactagagttgcaaagaaggactaaactatctttcaagttcatgcacatactaattttaatggtatgcatagtataaagattattt |
218 |
Q |
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| T |
27496525 |
aggaaaataaatattactagagttgcaaagaaggactaaactatctttcaagttcatgcacatactaattttaatggtatgcatagtataaagattattt |
27496426 |
T |
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| Q |
219 |
cgcacatgattgatttttctaattataaaaataaaaacaatttaattgtatgtttgattggtacataaca |
288 |
Q |
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| T |
27496425 |
cgcacatgattgatttttctaattat-aaaataaaaacaatttaattgtatgtttgattggtacataaca |
27496357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 27484438 - 27484320
Alignment:
| Q |
22 |
cttgtccaacccttgggaaggtgctgcat--agaatatccaaaccggccaaaagggtatatattccttctaggaagtgac-aaattttaattttttgtaa |
118 |
Q |
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|||||||||||||| |||||||||| || |||| || |||||||||||| |||| ||||||||||||||||||||||| ||| || ||||||| | | |
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| T |
27484438 |
cttgtccaacccttaggaaggtgctacacggagaaaatacaaaccggccaagagggcatatattccttctaggaagtgacaaaagttcgattttttctga |
27484339 |
T |
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| Q |
119 |
aggaaaataaatattacta |
137 |
Q |
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| T |
27484338 |
gggaaaataaatattacta |
27484320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 27484238 - 27484194
Alignment:
| Q |
240 |
attataaaaataaaaacaatttaattgtatgtttgattggtacat |
284 |
Q |
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| T |
27484238 |
attataaaaataaaagctatttaattgtatgtttgattgatacat |
27484194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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