View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9245_low_12 (Length: 240)
Name: NF9245_low_12
Description: NF9245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9245_low_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 54380117 - 54380338
Alignment:
| Q |
19 |
tacagggcatgtgacagggaaacctggacaagctaccatgacgggtcttccaccaatcagcgcagttcgcttggaacagatgagtaaagcggttcggtgg |
118 |
Q |
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| T |
54380117 |
tacagggcatgtggcagggaaacctggacaagctaccatgacgggtcttccaccaatcagcgcagttcgcttggaacagatgagtaaagcggttcggtgg |
54380216 |
T |
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| Q |
119 |
cttgtgattgaattgcagcatggctctggaggacctgctggttcttctagttcagctctttcacatccctcggccccttttgatgccaggttttctgaag |
218 |
Q |
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| T |
54380217 |
cttgtgattgaattgcagcatggctctggaggacctgctggttcttctagttcagctctttcacatccctcggccccttttgatgccaggttttctgaag |
54380316 |
T |
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| Q |
219 |
atgctgctcagtagcatttacc |
240 |
Q |
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| T |
54380317 |
atgctgctcagtagcatttacc |
54380338 |
T |
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