View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9245_low_3 (Length: 545)

Name: NF9245_low_3
Description: NF9245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9245_low_3
NF9245_low_3
[»] chr8 (8 HSPs)
chr8 (1-545)||(13850582-13851124)
chr8 (207-545)||(13869384-13869722)
chr8 (221-545)||(13891886-13892210)
chr8 (65-151)||(13869810-13869896)
chr8 (352-542)||(13898165-13898355)
chr8 (84-202)||(13892260-13892379)
chr8 (1-50)||(13869921-13869970)
chr8 (90-122)||(2302700-2302732)
[»] chr3 (1 HSPs)
chr3 (77-114)||(27016927-27016964)
[»] chr6 (5 HSPs)
chr6 (46-134)||(2732924-2733014)
chr6 (80-119)||(31694720-31694759)
chr6 (52-119)||(9194430-9194499)
chr6 (77-134)||(9074119-9074176)
chr6 (77-113)||(2457237-2457273)
[»] chr5 (3 HSPs)
chr5 (82-120)||(4787938-4787976)
chr5 (89-134)||(40990990-40991035)
chr5 (81-121)||(41399566-41399606)
[»] chr1 (2 HSPs)
chr1 (83-125)||(6025962-6026004)
chr1 (46-124)||(52517057-52517137)
[»] chr7 (1 HSPs)
chr7 (58-114)||(30408257-30408314)


Alignment Details
Target: chr8 (Bit Score: 514; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Complemental strand, 13851124 - 13850582
Alignment:
Q  1 attgtcatattcttttttcttatgtgcgtatttcaatattgttgaatagcgtagaggaatttgagcaagttgctatttttgtgatatactatttagtaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13851124 attgtcatattcttttttcttatgtgcgtatttcaatattgttgaatagcgtagaggaatttgagcaagttgctatttttgtgatatactatttagtaca 13851025  T
Q  101 aaatgttatcaaatagtggcaatagaggtgctatggcatttttgttgcataatgaaaattaaactaaccctattttgcgcaatctgtgatcgagaacact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13851024 aaatgttatcaaatagtggcaatagaggtgctatggcatttttgttgcataatgaaaattaaactaaccctattttgcgcaatctgtgatcgacaacact 13850925  T
Q  201 gatatgcgcttttctaattatgttttaagacgaagtcagaataataacatgtttatgcatgtctaccaaaagtccataacatgtattttactataatcat 300  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13850924 gatatgcgcttttctaattatgttttaagac--agtcagaataataacatgtttatgcatgtctaccaaaagtccataacatgtattttactataatcat 13850827  T
Q  301 ttcatcaggaaacagaagtatgtatatggaaccatattagacagcattccaactgggattgtaaaatttgatttgagtgccaaacctgatttcagcaaaa 400  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13850826 ttcatcaggaaacagaagtatgtttatggaaccatattagacagcattccaactgggattgtaaaatttgatttgagtgccaaacctgatttcggcaaaa 13850727  T
Q  401 caaagcttgaaattggaggaaatgttcatggtatctatgacttgggacaaggaacatttttctctgatcctatttatgtcccacgcgtccctggaagtga 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  13850726 caaagcttgaaattggaggaaatgttcatggtatctatgacttgggacaaggaacattttgctctgatcctatttatgtcccacgcgtccctggaactga 13850627  T
Q  501 ttccgatgaagatgatggatacttgatcttttttgtacatgatga 545  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13850626 ttccgatgaagatgatggatacttgatcttttttgtacatgatga 13850582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 207 - 545
Target Start/End: Complemental strand, 13869722 - 13869384
Alignment:
Q  207 cgcttttctaattatgttttaagacgaagtcagaataataacatgtttatgcatgtctaccaaaagtccataacatgtattttactataatcatttcatc 306  Q
    |||||| |||||  |||||| ||| | |||||||| | ||||||||||||||||| |||||| ||||||||||||| ||||||||||||  |||||||||    
T  13869722 cgctttcctaatcgtgttttgagatggagtcagaaaagtaacatgtttatgcatgactaccagaagtccataacatatattttactatatacatttcatc 13869623  T
Q  307 aggaaacagaagtatgtatatggaaccatattagacagcattccaactgggattgtaaaatttgatttgagtgccaaacctgatttcagcaaaacaaagc 406  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  13869622 aggaaacagaagtatgtatatggaaccatattagacagcattacaactgggattgttaaatttgatttgagtgccaaacctgatttcggcaaaacaaagc 13869523  T
Q  407 ttgaaattggaggaaatgttcatggtatctatgacttgggacaaggaacatttttctctgatcctatttatgtcccacgcgtccctggaagtgattccga 506  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||  ||||| ||    
T  13869522 ttgaagttggaggaaatgttcatggtatctatgacttgggacgaggaactttttgctctgatcctatttatgtcccacgcgtccctggaaccgattctga 13869423  T
Q  507 tgaagatgatggatacttgatcttttttgtacatgatga 545  Q
     ||||||||||||||||||||||||||||||||||||||    
T  13869422 agaagatgatggatacttgatcttttttgtacatgatga 13869384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 221 - 545
Target Start/End: Complemental strand, 13892210 - 13891886
Alignment:
Q  221 tgttttaagacgaagtcagaataataacatgtttatgcatgtctaccaaaagtccataacatgtattttactataatcatttcatcaggaaacagaagta 320  Q
    |||||| ||||| |||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13892210 tgttttgagacggagtcagaaaagtaacatgtttatgcatgtctgccaaaagtccataacatgtattttactatattcatttcatcaggaaacagaagta 13892111  T
Q  321 tgtatatggaaccatattagacagcattccaactgggattgtaaaatttgatttgagtgccaaacctgatttcagcaaaacaaagcttgaaattggagga 420  Q
    ||||||||| |||||||||| ||||| | ||||||||||| ||||||||||||||| |||| ||||| ||||  | ||||||||||||||| ||||||||    
T  13892110 tgtatatgggaccatattaggcagcaatgcaactgggattataaaatttgatttgaatgccgaacctaattttggaaaaacaaagcttgaagttggagga 13892011  T
Q  421 aatgttcatggtatctatgacttgggacaaggaacatttttctctgatcctatttatgtcccacgcgtccctggaagtgattccgatgaagatgatggat 520  Q
    ||| |||||||| ||||||||||||||| |||||| ||||  |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13892010 aatattcatggtctctatgacttgggaccaggaacgttttgttctgatgctatttatgtcccacgcgtccctggaactgattccgatgaagatgatggat 13891911  T
Q  521 acttgatcttttttgtacatgatga 545  Q
    |||||||||||||||||||||||||    
T  13891910 acttgatcttttttgtacatgatga 13891886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 13869896 - 13869810
Alignment:
Q  65 gcaagttgctatttttgtgatatactatttagtacaaaatgttatcaaatagtggcaatagaggtgctatggcatttttgttgcata 151  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |||  |||||||||||    
T  13869896 gcaagttgctatttttgtgatatgctatttagtacaaaatgttgtcaaacagtggcaatagaggtgctatagcacctttgttgcata 13869810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 352 - 542
Target Start/End: Complemental strand, 13898355 - 13898165
Alignment:
Q  352 actgggattgtaaaatttgatttgagtgccaaacctgatttcagcaaaacaaagcttgaaattggaggaaatgttcatggtatctatgacttgggacaag 451  Q
    ||||||||||| ||||||||||||   |||||||| ||||   | ||||| ||||||||| |||||||||||||    |||  |||||||||||||| ||    
T  13898355 actgggattgttaaatttgatttgcacgccaaaccggattctggaaaaacgaagcttgaagttggaggaaatgtcgtgggtcactatgacttgggaccag 13898256  T
Q  452 gaacatttttctctgatcctatttatgtcccacgcgtccctggaagtgattccgatgaagatgatggatacttgatcttttttgtacatga 542  Q
    |||  |||  ||||||  || ||||||| || || |||||||| |  ||||| || |||||||||||||||||||||||||||||||||||    
T  13898255 gaaggtttggctctgaggctgtttatgttccgcgtgtccctggcaccgattctgaagaagatgatggatacttgatcttttttgtacatga 13898165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 84 - 202
Target Start/End: Complemental strand, 13892379 - 13892260
Alignment:
Q  84 atatactatttagtacaaaatgttatcaaatagtggcaatagaggtgctatggcatttttgttgcataatgaaaattaaactaac-cctattttgcgcaa 182  Q
    ||||||| |||||||||||||||| ||||||||| ||| |||||||||||| ||| ||||||||||||  || | |||||| |||  |||||||| ||||    
T  13892379 atatactctttagtacaaaatgttgtcaaatagtagcagtagaggtgctatagcacttttgttgcatagcgagatttaaaccaactgctattttgtgcaa 13892280  T
Q  183 tctgtgatcgagaacactga 202  Q
    |||| ||| || ||||||||    
T  13892279 tctgcgattgataacactga 13892260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 13869970 - 13869921
Alignment:
Q  1 attgtcatattcttttttcttatgtgcgtatttcaatattgttgaatagc 50  Q
    ||||||||||||||||||||||||||  |||||| || ||||||||||||    
T  13869970 attgtcatattcttttttcttatgtgattatttctatgttgttgaatagc 13869921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 2302732 - 2302700
Alignment:
Q  90 tatttagtacaaaatgttatcaaatagtggcaa 122  Q
    ||||||||||||||||||||||||||| |||||    
T  2302732 tatttagtacaaaatgttatcaaatagaggcaa 2302700  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 27016964 - 27016927
Alignment:
Q  77 ttttgtgatatactatttagtacaaaatgttatcaaat 114  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  27016964 ttttgtgatatactatttagtacaaaatgttgtcaaat 27016927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 2732924 - 2733014
Alignment:
Q  46 atagcgtagaggaatttgagcaagttgctatt--tttgtgatatactatttagtacaaaatgttatcaaatagtggcaatagaggtgctat 134  Q
    ||||||||| | ||||||| ||| | ||||||  |||| ||||| ||||||||||||||||||| ||||||||  || ||||||| |||||    
T  2732924 atagcgtagtgaaatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaatagcagctatagaggcgctat 2733014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 31694759 - 31694720
Alignment:
Q  80 tgtgatatactatttagtacaaaatgttatcaaatagtgg 119  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  31694759 tgtgatacactatttagtacaaaatgttttcaaatagtgg 31694720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 9194499 - 9194430
Alignment:
Q  52 tagaggaatttgagcaagttgctatttttgtgatatac--tatttagtacaaaatgttatcaaatagtgg 119  Q
    |||||||||| || ||| |||||||| || || |||||  |||||||||||||||||| |||||||||||    
T  9194499 tagaggaattggaacaaattgctattgttctgctatacggtatttagtacaaaatgttgtcaaatagtgg 9194430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 9074176 - 9074119
Alignment:
Q  77 ttttgtgatatactatttagtacaaaatgttatcaaatagtggcaatagaggtgctat 134  Q
    ||||| |||| |||||||| |||||||||||||||||||| ||| |||| || |||||    
T  9074176 ttttgcgatacactatttactacaaaatgttatcaaatagaggctatagcggcgctat 9074119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 2457237 - 2457273
Alignment:
Q  77 ttttgtgatatactatttagtacaaaatgttatcaaa 113  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  2457237 ttttgtgatatgctatttagtacaaaatgttgtcaaa 2457273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 120
Target Start/End: Original strand, 4787938 - 4787976
Alignment:
Q  82 tgatatactatttagtacaaaatgttatcaaatagtggc 120  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  4787938 tgatacactatttagtacaaaatgttgtcaaatagtggc 4787976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 40990990 - 40991035
Alignment:
Q  89 ctatttagtacaaaatgttatcaaatagtggcaatagaggtgctat 134  Q
    ||||||||||||||||||| |||||||||||  |||| ||||||||    
T  40990990 ctatttagtacaaaatgttgtcaaatagtgggtatagtggtgctat 40991035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 41399606 - 41399566
Alignment:
Q  81 gtgatatactatttagtacaaaatgttatcaaatagtggca 121  Q
    |||||| |||||||||||||||||||| |||||||| ||||    
T  41399606 gtgatacactatttagtacaaaatgttgtcaaatagcggca 41399566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 6026004 - 6025962
Alignment:
Q  83 gatatactatttagtacaaaatgttatcaaatagtggcaatag 125  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||    
T  6026004 gatatgctatttagtacaaaatgttgtcaaatagtggctatag 6025962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 52517137 - 52517057
Alignment:
Q  46 atagcgtagaggaatttgagcaagttgctatt--tttgtgatatactatttagtacaaaatgttatcaaatagtggcaata 124  Q
    |||| |||| ||||||||| | | ||||||||  ||||||||||  ||||||||||||||| || |||||||| |||||||    
T  52517137 atagagtagtggaatttgaactaattgctattattttgtgatatgttatttagtacaaaatattgtcaaatagcggcaata 52517057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 30408314 - 30408257
Alignment:
Q  58 aatttgagcaagttgctatt-tttgtgatatactatttagtacaaaatgttatcaaat 114  Q
    ||||||| ||||| |||||| |||||||||| ||| ||||||||||||||| ||||||    
T  30408314 aatttgaacaagtggctattgtttgtgatattctaattagtacaaaatgttttcaaat 30408257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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