View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9245_low_5 (Length: 506)
Name: NF9245_low_5
Description: NF9245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9245_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 16 - 500
Target Start/End: Complemental strand, 53626528 - 53626044
Alignment:
| Q |
16 |
ggttttcctcacaacgttatcttcgatgaagacgagattccaagcggggttgatgcagcaaaaatttccatgcctgaagaagatcttctcaatgctcctg |
115 |
Q |
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| T |
53626528 |
ggttttcctcacaacgttatcttcgatgaagacgagattccaagcggggttgatgcagcaaaaatttccatgcctgaagaagatcttctcaatgctcctg |
53626429 |
T |
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| Q |
116 |
gggagacttacagcgttactttggatgctaagggaacctacaaattctactgttcacctcacgcaggagctggtatggttggacaagtgactgttaatta |
215 |
Q |
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| T |
53626428 |
gggagacttacagcgttactttggatgctaagggaacctacaaattctactgttcacctcacgcaggagctggtatggttggacaagtgactgttaatta |
53626329 |
T |
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| Q |
216 |
agttaaaatgcttcgtctcctatttataatatggtttgttattgttaattttgttcttgtagaagagcttaattaatcgttgttgttatgaaatactatt |
315 |
Q |
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| T |
53626328 |
agttaaaatgctttgtctcctatttataatatggtttgttattgttaattttgttcttgtagaagagcttaattaatcgttgttgttatgaaatactatt |
53626229 |
T |
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| Q |
316 |
tgtatgagatgaactggtgcaatgtaatgtaattcatttacataactagacatgaagacctgccgcgtacaattgtcttatatttgaacaactaaaattg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53626228 |
tgtatgagatgaactggtgcaatgtaatgtaattcatttacataactagacatgaagacctgccgcgtacaattgttttatatttgaacaactaaaattg |
53626129 |
T |
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| Q |
416 |
aacatcttttgccacaactttaagtggttaatctagctcaaatatatgaggttatgtcaacgagttataaaattaaaacaccaaa |
500 |
Q |
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| T |
53626128 |
aacatcttttgccacaactttaagtggttaatctagctcaaatatatgaggttatgtcaacgagttataaaattaaaacaccaaa |
53626044 |
T |
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