View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9245_low_6 (Length: 457)

Name: NF9245_low_6
Description: NF9245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9245_low_6
NF9245_low_6
[»] chr8 (11 HSPs)
chr8 (6-204)||(14816708-14816906)
chr8 (6-204)||(14828834-14829032)
chr8 (6-204)||(9311160-9311361)
chr8 (284-345)||(9311019-9311080)
chr8 (284-345)||(9312175-9312236)
chr8 (295-343)||(14816570-14816618)
chr8 (295-343)||(14829122-14829170)
chr8 (295-351)||(44632698-44632754)
chr8 (154-193)||(30937960-30937999)
chr8 (154-193)||(30938114-30938153)
chr8 (286-342)||(45378549-45378605)
[»] chr4 (10 HSPs)
chr4 (6-204)||(11038716-11038917)
chr4 (33-196)||(12096400-12096568)
chr4 (284-348)||(36220599-36220663)
chr4 (286-344)||(756486-756544)
chr4 (286-343)||(702651-702708)
chr4 (286-343)||(770950-771007)
chr4 (286-343)||(35060454-35060511)
chr4 (284-345)||(51645970-51646031)
chr4 (284-348)||(11038572-11038636)
chr4 (284-348)||(36219402-36219466)
[»] chr3 (7 HSPs)
chr3 (6-204)||(39992212-39992413)
chr3 (296-440)||(39992505-39992649)
chr3 (286-352)||(21815899-21815965)
chr3 (284-344)||(20185812-20185872)
chr3 (284-346)||(27688483-27688545)
chr3 (284-345)||(20184446-20184507)
chr3 (284-345)||(27695574-27695635)
[»] chr2 (8 HSPs)
chr2 (6-204)||(13810302-13810499)
chr2 (12-133)||(7190154-7190287)
chr2 (284-345)||(7184879-7184940)
chr2 (122-191)||(8885895-8885964)
chr2 (122-191)||(12601474-12601543)
chr2 (284-351)||(13810579-13810644)
chr2 (286-344)||(36889748-36889806)
chr2 (284-344)||(36888337-36888397)
[»] scaffold0029 (3 HSPs)
scaffold0029 (12-204)||(71554-71749)
scaffold0029 (284-343)||(71828-71887)
scaffold0029 (284-344)||(70668-70728)
[»] chr1 (11 HSPs)
chr1 (6-204)||(46015576-46015776)
chr1 (30-204)||(2938704-2938884)
chr1 (22-204)||(33333140-33333331)
chr1 (22-75)||(48221719-48221772)
chr1 (284-350)||(46014694-46014760)
chr1 (122-191)||(51242728-51242797)
chr1 (284-343)||(46015856-46015915)
chr1 (286-352)||(50682588-50682654)
chr1 (293-343)||(51599441-51599491)
chr1 (284-345)||(33332175-33332236)
chr1 (168-196)||(48222304-48222332)
[»] chr7 (4 HSPs)
chr7 (33-204)||(45087204-45087381)
chr7 (286-353)||(21709148-21709215)
chr7 (154-193)||(29261995-29262034)
chr7 (154-193)||(29262149-29262188)
[»] chr6 (5 HSPs)
chr6 (12-192)||(17971572-17971755)
chr6 (12-96)||(17971479-17971563)
chr6 (286-344)||(21282816-21282874)
chr6 (286-342)||(20488261-20488317)
chr6 (284-344)||(29751139-29751199)
[»] scaffold0042 (1 HSPs)
scaffold0042 (24-98)||(90987-91058)
[»] scaffold0054 (1 HSPs)
scaffold0054 (123-196)||(48706-48779)
[»] chr5 (2 HSPs)
chr5 (284-345)||(19718889-19718950)
chr5 (6-41)||(19718028-19718063)
[»] scaffold0394 (1 HSPs)
scaffold0394 (284-345)||(14268-14330)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 6 - 204
Target Start/End: Complemental strand, 14816906 - 14816708
Alignment:
Q  6 gtttggtgttgctaccatttgattttgttgttgttgtatgagaggatttatgggttacttcatgatgatgatgatgtcaaaattgttgttgctgcttaat 105  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14816906 gtttgatgttgctaccatttgattttgttgttgttgtatgagaggatttatgggttacttcatgatgatgatgatgccaaaattgttgttgctgcttaat 14816807  T
Q  106 tttgttgatgctattattgttgttcttcctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacg 204  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14816806 tttgttgatgttattattgttgttcttcttatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccttaacg 14816708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 6 - 204
Target Start/End: Original strand, 14828834 - 14829032
Alignment:
Q  6 gtttggtgttgctaccatttgattttgttgttgttgtatgagaggatttatgggttacttcatgatgatgatgatgtcaaaattgttgttgctgcttaat 105  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14828834 gtttgatgttgctaccatttgattttgttgttgttgtatgagaggatttatgggttacttcatgatgatgatgatgccaaaattgttgttgctgcttaat 14828933  T
Q  106 tttgttgatgctattattgttgttcttcctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacg 204  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14828934 tttgttgatgttattattgttgttcttcttatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccttaacg 14829032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 6 - 204
Target Start/End: Complemental strand, 9311361 - 9311160
Alignment:
Q  6 gtttggtgttgctaccatttgattttgttgttgttgtatgagaggatttatgggttacttcatgatgatgatgatgtcaaaattgttgttgctgct---t 102  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   |    
T  9311361 gtttgatgtcgctaccatttgattttgttgttgttgtatgagaggatttatgggttacttcatgatgatgatgatgccaaaattgttgttgctgctgctt 9311262  T
Q  103 aattttgttgatgctattattgttgttcttcctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaa 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9311261 aattttgttgatgctattattgttgttcttcctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaatataaaccctaa 9311162  T
Q  203 cg 204  Q
    ||    
T  9311161 cg 9311160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 345
Target Start/End: Complemental strand, 9311080 - 9311019
Alignment:
Q  284 agttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagccta 345  Q
    |||||||| | ||||||||||| ||||| |||  |||| |||||||||||||||||||||||    
T  9311080 agttatgggaccaaagcgataccaaaaaattagataagggactaaaatagcaattaagccta 9311019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 9312175 - 9312236
Alignment:
Q  284 agttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagccta 345  Q
    |||||||| ||||||||||||| ||||| ||| ||||  |||||||||||||||||| ||||    
T  9312175 agttatgggatcaaagcgataccaaaaaattagttaaaggactaaaatagcaattaaaccta 9312236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 343
Target Start/End: Complemental strand, 14816618 - 14816570
Alignment:
Q  295 caaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcc 343  Q
    ||||||||||| ||||| ||| ||||| |||||||||||||||||||||    
T  14816618 caaagcgataccaaaaaattagttaagggactaaaatagcaattaagcc 14816570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 14829122 - 14829170
Alignment:
Q  295 caaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcc 343  Q
    ||||||||||| ||||| ||| ||||| |||||||||||||||||||||    
T  14829122 caaagcgataccaaaaaattagttaagggactaaaatagcaattaagcc 14829170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 44632754 - 44632698
Alignment:
Q  295 caaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcctatatttt 351  Q
    |||| |||||| ||||| ||||||||||||| |||||||||||||| ||||| ||||    
T  44632754 caaaacgataccaaaaaattaattaagagacgaaaatagcaattaaacctatttttt 44632698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 30937960 - 30937999
Alignment:
Q  154 gaaggagatgaaggattgagatggagaagatgaagaaaat 193  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  30937960 gaaggagatgaaggattgtgatggagaagatgaaggaaat 30937999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 30938114 - 30938153
Alignment:
Q  154 gaaggagatgaaggattgagatggagaagatgaagaaaat 193  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  30938114 gaaggagatgaaggattgtgatggagaagatgaaggaaat 30938153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 45378549 - 45378605
Alignment:
Q  286 ttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagc 342  Q
    |||||| | ||||||||||| ||||| ||| ||||| ||| ||||||||||||||||    
T  45378549 ttatgggaccaaagcgataccaaaaaattatttaagggacgaaaatagcaattaagc 45378605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 6 - 204
Target Start/End: Complemental strand, 11038917 - 11038716
Alignment:
Q  6 gtttggtgttgctaccatttgattttgttgttgttgtatgagaggatttatgggttacttcatgatgatgatgatgtcaaaattgttgttg---ctgctt 102  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||   ||||||    
T  11038917 gtttgatgttgctaccatttgattttgttgttgttgtatgagagggtttatgggttacttcatgatgatgatgatgccaaaattgttgttggtgctgctt 11038818  T
Q  103 aattttgttgatgctattattgttgttcttcctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11038817 aattttgttgatgctattattgttgttcttcctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaa 11038718  T
Q  203 cg 204  Q
    ||    
T  11038717 cg 11038716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 12096400 - 12096568
Alignment:
Q  33 ttgttgttgtatgagaggatttatgggttacttc---atgatgatgatgatgtcaaaattgttgttgctg---cttaattttgttgatgctattattgtt 126  Q
    |||||||||||||||||||||||||||||| |||   |||||||||||||||| ||||||||||||| ||   |||||||||||||||| |  | |||||    
T  12096400 ttgttgttgtatgagaggatttatgggttaattcatgatgatgatgatgatgttaaaattgttgttgttgtttcttaattttgttgatgttggtgttgtt 12096499  T
Q  127 gttcttcctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaa 196  Q
    |||||||||| |||||||||||| | |||| |||||| | |||||| |||||||||||||||||||||||    
T  12096500 gttcttccta-ttttccagaaatggatgaatgagatgcaagattgatatggagaagatgaagaaaataaa 12096568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 348
Target Start/End: Original strand, 36220599 - 36220663
Alignment:
Q  284 agttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcctatat 348  Q
    |||||||| | |||| |||||| ||||| ||| |||||  |||||||||||||||||||||||||    
T  36220599 agttatgggaccaaaacgataccaaaaaattagttaaggtactaaaatagcaattaagcctatat 36220663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 344
Target Start/End: Complemental strand, 756544 - 756486
Alignment:
Q  286 ttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcct 344  Q
    |||||| | ||||||||||| ||||| ||| ||||| ||| ||||||||||||||||||    
T  756544 ttatgggaccaaagcgataccaaaaaattagttaagggacgaaaatagcaattaagcct 756486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 702651 - 702708
Alignment:
Q  286 ttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcc 343  Q
    |||||| | ||||||||||| ||||| ||| ||||| ||| |||||||||||||||||    
T  702651 ttatgggaccaaagcgataccaaaaaattagttaagggacgaaaatagcaattaagcc 702708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 770950 - 771007
Alignment:
Q  286 ttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcc 343  Q
    |||||| | ||||||||||| ||||| ||| ||||| ||| |||||||||||||||||    
T  770950 ttatgggaccaaagcgataccaaaaaattagttaagggacgaaaatagcaattaagcc 771007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 35060454 - 35060511
Alignment:
Q  286 ttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcc 343  Q
    |||||| | ||||||||||| ||||| ||| ||||| ||| |||||||||||||||||    
T  35060454 ttatgggaccaaagcgataccaaaaaattagttaagggacgaaaatagcaattaagcc 35060511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 51645970 - 51646031
Alignment:
Q  284 agttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagccta 345  Q
    |||||||| | |||| |||||| ||||| |||  |||| |||||||||||||||||||||||    
T  51645970 agttatgggaccaaaccgataccaaaaaattagctaagggactaaaatagcaattaagccta 51646031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 348
Target Start/End: Complemental strand, 11038636 - 11038572
Alignment:
Q  284 agttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcctatat 348  Q
    |||||||| | |||||| |||| ||||| |||  |||| ||||||||||||||||||||| ||||    
T  11038636 agttatgggaccaaagcaataccaaaaaattagctaagggactaaaatagcaattaagccaatat 11038572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 348
Target Start/End: Complemental strand, 36219466 - 36219402
Alignment:
Q  284 agttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcctatat 348  Q
    |||||||| | |||| ||||||  |||| ||| ||||| |||||||||||||||||||| |||||    
T  36219466 agttatgggaccaaaccgatactcaaaaattagttaagggactaaaatagcaattaagcatatat 36219402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 6 - 204
Target Start/End: Original strand, 39992212 - 39992413
Alignment:
Q  6 gtttggtgttgctaccatttgattttgttgttgttgtatgagaggatttatgggttacttcatgatgatgatgatgtcaaaattgttgttgct---gctt 102  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||   ||||    
T  39992212 gtttgatgttgctaccatttgattttgttgttgttgtatgagaggatttatgggttacttcatgatgacgatgatgtcaaaattattgttgctgctgctt 39992311  T
Q  103 aattttgttgatgctattattgttgttcttcctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39992312 aattttgttgatgctattattgttgttcttcctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaa 39992411  T
Q  203 cg 204  Q
    ||    
T  39992412 cg 39992413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 296 - 440
Target Start/End: Original strand, 39992505 - 39992649
Alignment:
Q  296 aaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcctatattttaacttggtgaaatgataaagagctgaaggtctatgtatacttta 395  Q
    |||| ||||| ||||| ||| ||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39992505 aaagtgataccaaaaaattagttaagggactaaaatagtaattaagcctatattttaacttggtgaaattataaagagctgaaggtctatgtatacttta 39992604  T
Q  396 tgtacggtgaccgttaaatgtctcatcttctctatgagctagctg 440  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  39992605 tgtacggtgactgttaaatgtctcatcttctctatgagctagctg 39992649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 352
Target Start/End: Complemental strand, 21815965 - 21815899
Alignment:
Q  286 ttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcctatatttta 352  Q
    |||||||| ||||||||||| ||||| ||| ||||| ||| |||||||||||||||| |||| ||||    
T  21815965 ttatggaaccaaagcgatactaaaaaattagttaagggacgaaaatagcaattaagcttataattta 21815899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 20185812 - 20185872
Alignment:
Q  284 agttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcct 344  Q
    |||||||| |||||| |||||||||||| |||  |||  ||||||||||||||||||||||    
T  20185812 agttatgggatcaaaccgatacaaaaaaattaggtaatggactaaaatagcaattaagcct 20185872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 346
Target Start/End: Complemental strand, 27688545 - 27688483
Alignment:
Q  284 agttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcctat 346  Q
    |||||||| | |||| |||||| ||| | ||| ||||| ||||||||||||||||||||||||    
T  27688545 agttatgggaccaaaccgataccaaataattagttaagggactaaaatagcaattaagcctat 27688483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 345
Target Start/End: Complemental strand, 20184507 - 20184446
Alignment:
Q  284 agttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagccta 345  Q
    |||||||| | |||| |||||| ||||| ||| ||||| |||||||||| ||||||||||||    
T  20184507 agttatgggaccaaaccgataccaaaaaattagttaagggactaaaataacaattaagccta 20184446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 27695574 - 27695635
Alignment:
Q  284 agttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagccta 345  Q
    |||||||| | |||| |||||| ||| | ||| ||||| |||||||||||||||||||||||    
T  27695574 agttatgggaccaaaccgataccaaataattagttaagggactaaaatagcaattaagccta 27695635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 167; Significance: 3e-89; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 6 - 204
Target Start/End: Original strand, 13810302 - 13810499
Alignment:
Q  6 gtttggtgttgctaccatttgattttgttgttgttgtatgagaggatttatgggttacttcatgatgatgatgatgtcaaaattgttgttgctgcttaat 105  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13810302 gtttgatgttgctaccctttgattttgttgttgttgtatgagaggatttatgggttacttcatgatgatgatgatgtcaaaattgttgttgctgcttaat 13810401  T
Q  106 tttgttgatgctattattgttgttcttcctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacg 204  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| || | |||||||||||||||||||||||||||||||||||||    
T  13810402 tttgttgatgctattatcgttgttcttcctatttttccagaaatag-tgaaggagacgatgaattgagatggagaagatgaagaaaataaaccctaacg 13810499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 7190287 - 7190154
Alignment:
Q  12 tgttgctaccatttgattttgttgttgttgtatgagaggatttatgggttacttcatgatgatgat---------gatgtcaaaa---ttgttgttgctg 99  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||| |||||   ||||||||||||    
T  7190287 tgttgctactatttgattttgttgttgttgtatgagaggatttatgggttacttcatgatgatgatgatgatgatgatgccaaaatcgttgttgttgctg 7190188  T
Q  100 cttaattttgttgatgctattattgttgttcttc 133  Q
    |||||||| |||||||||||| ||||||||||||    
T  7190187 cttaatttagttgatgctattgttgttgttcttc 7190154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 345
Target Start/End: Complemental strand, 7184940 - 7184879
Alignment:
Q  284 agttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagccta 345  Q
    |||||||| |||||| |||||| ||||| ||| |||||||||||||||||||||||||||||    
T  7184940 agttatgggatcaaaccgataccaaaaaattagttaagagactaaaatagcaattaagccta 7184879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 8885964 - 8885895
Alignment:
Q  122 ttgttgttcttcctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaa 191  Q
    |||||||||||  || |||||||||||| | |||| ||| |||| |||| ||||||||||||||||||||    
T  8885964 ttgttgttcttaatacttttccagaaatggatgaatgagttgaaagattcagatggagaagatgaagaaa 8885895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 12601543 - 12601474
Alignment:
Q  122 ttgttgttcttcctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaa 191  Q
    |||||||||||| || ||||||| |||| | |||||||| |||| |||| |||||||| |||||||||||    
T  12601543 ttgttgttcttcatacttttccataaatggatgaaggagttgaaagattcagatggaggagatgaagaaa 12601474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 351
Target Start/End: Original strand, 13810579 - 13810644
Alignment:
Q  284 agttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcctatatttt 351  Q
    |||||||| | ||||||||||| ||||  ||| ||||||||||||||| |||||||||||||| ||||    
T  13810579 agttatgggaccaaagcgataccaaaa--ttagttaagagactaaaattgcaattaagcctatctttt 13810644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 344
Target Start/End: Original strand, 36889748 - 36889806
Alignment:
Q  286 ttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcct 344  Q
    |||||| | |||| |||||| ||||| ||| ||||| ||||||||||||||||||||||    
T  36889748 ttatgggaccaaaccgataccaaaaaattagttaagggactaaaatagcaattaagcct 36889806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 36888397 - 36888337
Alignment:
Q  284 agttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcct 344  Q
    |||||||| | |||| |||||| ||||| |||  |||| ||||||||||||||||||||||    
T  36888397 agttatgggaccaaaccgataccaaaaaattagctaagggactaaaatagcaattaagcct 36888337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 71554 - 71749
Alignment:
Q  12 tgttgctaccatttgattttgttgttgttgtatgagaggatttatgggttacttcatgatgatgatgatgtcaaaattgt---tgttgctgcttaatttt 108  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||     
T  71554 tgttgctactatttgattttgttgttgttgtatgagaggatttatgggttacttcatgatgatgatgatgccaaaattgttgttgttgctgcttaattta 71653  T
Q  109 gttgatgctattattgttgttcttcctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacg 204  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  71654 gttgatgctattgttgttgttcttcctatttttctagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacg 71749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 343
Target Start/End: Original strand, 71828 - 71887
Alignment:
Q  284 agttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcc 343  Q
    |||||||| | ||||||||||| ||||| ||| ||||| |||||||||||||||||||||    
T  71828 agttatgggaccaaagcgataccaaaaaattagttaagggactaaaatagcaattaagcc 71887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 70728 - 70668
Alignment:
Q  284 agttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcct 344  Q
    |||||||| | |||| |||||| ||||| ||| ||||| ||||||||||||||||||||||    
T  70728 agttatgggaccaaaccgataccaaaaaattagttaagggactaaaatagcaattaagcct 70668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 6 - 204
Target Start/End: Original strand, 46015576 - 46015776
Alignment:
Q  6 gtttggtgttgctaccatttgattttgttgttgttgtatgagaggatttatgggttacttcatgatgatgatgatgtcaaaa---ttgttgttgctgctt 102  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||   ||||||||||| |||    
T  46015576 gtttgatgttgctaccatttgattttgttgttgttgtgtgagaggatttatgggttacttcatgatgataatgatgccaaaattgttgttgttgctcctt 46015675  T
Q  103 aattttgttgatgctattattgttgttcttcctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  46015676 aattttgttgatgctattattgttgttcttcctatttttccagaaatag-tgaagaagatgaaggattgagatggagaggatgaagaaaataaaccctaa 46015774  T
Q  203 cg 204  Q
    ||    
T  46015775 cg 46015776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 30 - 204
Target Start/End: Complemental strand, 2938884 - 2938704
Alignment:
Q  30 ttgttgttgttgtatgagaggatttatgggttacttcatgatgatgatgatgt---caaaattgttgttg---ctgcttaattttgttgatgctattatt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||   ||||||||||| |||||||||||| ||    
T  2938884 ttgttgttgttgtatgagaggatttatgggttacttcatgatgatgatgatgatgccaaaattgttgttgttgctgcttaatttagttgatgctattgtt 2938785  T
Q  124 gttgttcttcctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacg 204  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2938784 gttgttcttcctattttttcagaaatagttaaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacg 2938704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 33333140 - 33333331
Alignment:
Q  22 atttgattttgttgttgttgtatgagaggatttatgggttacttc---atgatgatgatgatgtcaaaa---ttgttgttgctgcttaattttgttgatg 115  Q
    ||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||||||| |||||   ||||||||| |||||||||| |||||||    
T  33333140 atttgattttgttgttgttgtatgagaagatttatgggttacttcatgatgatgatgatgatgccaaaattgttgttgttgatgcttaatttagttgatg 33333239  T
Q  116 ctattattgttgttcttcc---tatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacg 204  Q
    ||||| |||||||||||||   ||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  33333240 ctattgttgttgttcttcctattattttttcagaaatggttgaaggagatgaaggattgagatggaaaagatgaagaaaataaaccttaacg 33333331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 48221772 - 48221719
Alignment:
Q  22 atttgattttgttgttgttgtatgagaggatttatgggttacttcatgatgatg 75  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  48221772 atttgattttgttgtggttgtatgagaagatttatgggttacttcatgatgatg 48221719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 350
Target Start/End: Complemental strand, 46014760 - 46014694
Alignment:
Q  284 agttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcctatattt 350  Q
    |||||||| ||| ||||||||| ||||| ||| ||||  ||||||||||||||||||||||| ||||    
T  46014760 agttatgggatcgaagcgataccaaaaaattagttaaatgactaaaatagcaattaagcctacattt 46014694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 51242728 - 51242797
Alignment:
Q  122 ttgttgttcttcctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaa 191  Q
    |||||||||||  || |||||||||||| | |||||||| |||| |||| | ||||||||||||||||||    
T  51242728 ttgttgttcttaatacttttccagaaatggatgaaggagttgaaagattcaaatggagaagatgaagaaa 51242797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 343
Target Start/End: Original strand, 46015856 - 46015915
Alignment:
Q  284 agttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcc 343  Q
    |||||||| | ||||||||||| ||||| ||| ||||| |||||||||| ||||||||||    
T  46015856 agttatgggaccaaagcgataccaaaaaattacttaagggactaaaataacaattaagcc 46015915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 352
Target Start/End: Original strand, 50682588 - 50682654
Alignment:
Q  286 ttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcctatatttta 352  Q
    |||||| | ||||||||||| |||||  |||||||| ||| |||||||||||||||| ||| |||||    
T  50682588 ttatgggaccaaagcgataccaaaaaaataattaagggaccaaaatagcaattaagcttatttttta 50682654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 343
Target Start/End: Original strand, 51599441 - 51599491
Alignment:
Q  293 atcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcc 343  Q
    ||||||||||||| ||||| ||| ||||| ||| |||||||||||||||||    
T  51599441 atcaaagcgataccaaaaaattagttaagggacgaaaatagcaattaagcc 51599491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 345
Target Start/End: Complemental strand, 33332236 - 33332175
Alignment:
Q  284 agttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagccta 345  Q
    |||||||| | |||| |||||| ||| |  || |||||||||||||||||||||||||||||    
T  33332236 agttatgggaccaaaccgataccaaacaactagttaagagactaaaatagcaattaagccta 33332175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 196
Target Start/End: Original strand, 48222304 - 48222332
Alignment:
Q  168 attgagatggagaagatgaagaaaataaa 196  Q
    |||||||||||||||||||||||||||||    
T  48222304 attgagatggagaagatgaagaaaataaa 48222332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 8e-65; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 33 - 204
Target Start/End: Complemental strand, 45087381 - 45087204
Alignment:
Q  33 ttgttgttgtatgagaggatttatgggttacttcatgatgatgatgatgtcaaaattgttgttg---ctgcttaattttgttgatgctattattgttgtt 129  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||   ||||||||||| |||||||||||| ||||||||    
T  45087381 ttgttgctgtatgagaggatttatgggttacttcatgatgatgatgataccaaaattgttgttgttgctgcttaatttagttgatgctattgttgttgtt 45087282  T
Q  130 cttcctatt---tttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacg 204  Q
    |||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45087281 cttcctattatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaatcctaacg 45087204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 353
Target Start/End: Complemental strand, 21709215 - 21709148
Alignment:
Q  286 ttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcctatattttaa 353  Q
    |||||| | ||||||||||| ||||| ||| ||||| ||| ||||||||||||||||||| |||||||    
T  21709215 ttatgggaccaaagcgatactaaaaaattagttaagggacgaaaatagcaattaagcctaaattttaa 21709148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 29262034 - 29261995
Alignment:
Q  154 gaaggagatgaaggattgagatggagaagatgaagaaaat 193  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  29262034 gaaggagatgaaggattgtgatggagaagatgaaggaaat 29261995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 29262188 - 29262149
Alignment:
Q  154 gaaggagatgaaggattgagatggagaagatgaagaaaat 193  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  29262188 gaaggagatgaaggattgtgatggagaagatgaaggaaat 29262149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 17971572 - 17971755
Alignment:
Q  12 tgttgctaccatttgattttgttgttgttgtatgagaggatttatgggttacttcatgatgatgatgatgtcaaaattgttgtt---gctgcttaatttt 108  Q
    ||||||||| |||||| |||||||||||||||||| ||| |||||||||| |||| |||||||||||||| |||||||||||||   |||||||||||||    
T  17971572 tgttgctactatttgactttgttgttgttgtatgaaagggtttatgggtttcttcttgatgatgatgatgccaaaattgttgttcttgctgcttaatttt 17971671  T
Q  109 gttgatgctattattgttgttcttcctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaa 192  Q
    |||||| ||| | ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||    
T  17971672 gttgatactactgttgttgttcttcctatttttccagaaataattgaaggatatgaaggattgagatggagaacatgaagaaaa 17971755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 17971479 - 17971563
Alignment:
Q  12 tgttgctaccatttgattttgttgttgttgtatgagaggatttatgggttacttcatgatgatgatgatgtcaaaattgttgttg 96  Q
    ||||||||| |||||| |||||||||||||||||| ||| |||||||||| |||| |||||||||||||| ||||||||||||||    
T  17971479 tgttgctactatttgactttgttgttgttgtatgaaagggtttatgggtttcttcttgatgatgatgatgccaaaattgttgttg 17971563  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 286 - 344
Target Start/End: Complemental strand, 21282874 - 21282816
Alignment:
Q  286 ttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcct 344  Q
    |||||| | ||||||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  21282874 ttatgggaccaaagcgatacaaaaaaattaattaagggacgaaaatagcaattaagcct 21282816  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 20488317 - 20488261
Alignment:
Q  286 ttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagc 342  Q
    |||| ||| ||||||||||| |||||| || |||||||||||||||| |||||||||    
T  20488317 ttatagaaccaaagcgatactaaaaatatacttaagagactaaaataacaattaagc 20488261  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 29751139 - 29751199
Alignment:
Q  284 agttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagcct 344  Q
    |||||||| | |||| |||||| ||| | ||| ||||| ||||||||||||||||||||||    
T  29751139 agttatgggaccaaaccgataccaaataattagttaagggactaaaatagcaattaagcct 29751199  T

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Target: scaffold0042 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 90987 - 91058
Alignment:
Q  24 ttgattttgttgttgttgtatgagaggatttatgggttacttcatgatgatgatgatgtcaaaattgttgttgct 98  Q
    ||||||||||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||| |||||    
T  90987 ttgattttgttgttgttgtatgagaagatttatgggttacttc---atgatgatgatgtcaaaattgtttttgct 91058  T

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Target: scaffold0054 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 48706 - 48779
Alignment:
Q  123 tgttgttcttcctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaa 196  Q
    ||||||||||| || ||||| |||||| | |||||| ||||||||||| ||||||||||| ||||| |||||||    
T  48706 tgttgttcttcatacttttctagaaattgatgaaggtgatgaaggattcagatggagaaggtgaaggaaataaa 48779  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 19718889 - 19718950
Alignment:
Q  284 agttatggaatcaaagcgatacaaaaaatttaattaagagactaaaatagcaattaagccta 345  Q
    |||||| | ||||||||||||| ||||| ||| ||||  |||||||||||||||||||||||    
T  19718889 agttataggatcaaagcgataccaaaaaattagttaaaggactaaaatagcaattaagccta 19718950  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 19718063 - 19718028
Alignment:
Q  6 gtttggtgttgctaccatttgattttgttgttgttg 41  Q
    ||||| ||||||||||||||||||||||||||||||    
T  19718063 gtttgatgttgctaccatttgattttgttgttgttg 19718028  T

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Target: scaffold0394 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 345
Target Start/End: Complemental strand, 14330 - 14268
Alignment:
Q  284 agttatggaatcaaagcgatac-aaaaaatttaattaagagactaaaatagcaattaagccta 345  Q
    |||||||| | |||| |||||| |||||| ||| ||||| |||||||||||||||||||||||    
T  14330 agttatgggaccaaaccgataccaaaaaaattagttaagggactaaaatagcaattaagccta 14268  T

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