View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9245_low_9 (Length: 410)
Name: NF9245_low_9
Description: NF9245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9245_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 161 - 398
Target Start/End: Complemental strand, 49767514 - 49767273
Alignment:
| Q |
161 |
tttatacttgaatttgataagcgtcattcccataacaaaaacattcacaaatgtgtagcttattagtttgtttgttt----atcgaatgtgtctttcatt |
256 |
Q |
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| T |
49767514 |
tttatacttgaatctgataagcgtcattcctataacaaaaacattcacaaatgtgtagcttattagtttgtttgtttgtttatcgaatgtgtctttcatt |
49767415 |
T |
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| Q |
257 |
aatttgatttcaaatgtgtttttataagttaatcaattttattcataaattactaacataagacacacacaatgatgaatttatagttttgaatgagaac |
356 |
Q |
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| T |
49767414 |
aatttgatttcaaatgtgtttttataagttaatcaattttattcataaattactaacataagacacacacaatgatgaatttatagttttgaaagagaac |
49767315 |
T |
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| Q |
357 |
atctcacacatcttgcgacaaactaatcactctaacatgaag |
398 |
Q |
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| T |
49767314 |
atctcacacatcttgcgacaaactaatcactcaaacatgaag |
49767273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 49767695 - 49767552
Alignment:
| Q |
18 |
ggatccatgctacatagtgcaacaactatgaataagaagttttctgtctctaaatctatcggttattatagttgttgcattgtgtagcagttgcagggaa |
117 |
Q |
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| T |
49767695 |
ggatccatgctaaatagtgcaacaactatgaataagaagttttatgtctctaaatctatcggttattatagttgttgcat----tagcagttgcagggaa |
49767600 |
T |
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| Q |
118 |
tccaaatcttgttttgacagcggctttaaaagggttcattttgtttat |
165 |
Q |
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| T |
49767599 |
tccaaatctggttttgacagcggctttaaaagggttcattttgtttat |
49767552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 3835353 - 3835448
Alignment:
| Q |
54 |
aagttttctgtctctaaatctatcggttattatagttgttgcattgtgtagcagttgcagggaatccaaatcttgttttgacagcggctttaaaagg |
150 |
Q |
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||||||||| ||||||||||| | ||||||||||||||||| ||| || |||| ||| ||||||||||||| |||||||| | ||||||||||||| |
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| T |
3835353 |
aagttttctctctctaaatctcttggttattatagttgttg-attatgcagcatttgtagggaatccaaattctgttttgataacggctttaaaagg |
3835448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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