View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9246_high_11 (Length: 400)
Name: NF9246_high_11
Description: NF9246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9246_high_11 |
 | |
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| [»] chr3 (12 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 15 - 400
Target Start/End: Original strand, 26737820 - 26738205
Alignment:
| Q |
15 |
attattcacaccctttttcttgatatagcgaaattggaaggctatgcattcacacatttgtaagcacaaatgctcacattgtttataggtgtaattttta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| |
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| T |
26737820 |
attattcacaccctttttcttgatatagcgaaattggaaggctatgcattcacacatttgtaagcatatatgcttacattgtttataggtgtaattttta |
26737919 |
T |
|
| Q |
115 |
cggaatccatagtgatagctgttaaactgaacacgaggtaagaatttgaagcgatattctgtcttgttattgcaagaaaattggaagcttggtttgcacc |
214 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26737920 |
tggaatccatagttatagctgttaaacttaacacgtggtaagaatttgaagcgatattctgtcttgttattgcaagaaaattggaagcttggtttgcacc |
26738019 |
T |
|
| Q |
215 |
cttgagaccaatcttggttattgattatgctataacctggaagacacgaacattttctaccttttattggaccataactgcaagtgctgttaggtccaca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26738020 |
cttgagaccaatcttggttattgattatgctataacctggaagacacgaacattttctaccttttattggaccataactgcaagtgctgttaggtccaca |
26738119 |
T |
|
| Q |
315 |
aattccatgaatttgacaaggttgttgaacgaattgccctgacactaaccacttctcttgcccttgttttcggctataaacacgaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26738120 |
aattccatgaatttgacaaggttgttggacgaattgccctgacactaaccacttctcttgcccttgttttcggctataaacacgaa |
26738205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 15 - 400
Target Start/End: Original strand, 26714584 - 26714969
Alignment:
| Q |
15 |
attattcacaccctttttcttgatatagcgaaattggaaggctatgcattcacacatttgtaagcacaaatgctcacattgtttataggtgtaattttta |
114 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| | ||||| |||||||| |||||||||||||||| |
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|
| T |
26714584 |
attattcacaccctttttcttgacatagcgaaattggaaagctatgcattcacacatttgtaagcatagatgcttacattgttcataggtgtaattttta |
26714683 |
T |
|
| Q |
115 |
cggaatccatagtgatagctgttaaactgaacacgaggtaagaatttgaagcgatattctgtcttgttattgcaagaaaattggaagcttggtttgcacc |
214 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
26714684 |
tggaatccatagtcatagctgttaaactcaacacggggtaagaatttgaagcgatattctgtcttgttattgcatgaaaattggaagcttggtttgcacc |
26714783 |
T |
|
| Q |
215 |
cttgagaccaatcttggttattgattatgctataacctggaagacacgaacattttctaccttttattggaccataactgcaagtgctgttaggtccaca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26714784 |
cttgagaccaatcttggttattgattatgctataacctagaagacacgaacattttctaccttttattggaccataactgcaagtgctgttaggtccaca |
26714883 |
T |
|
| Q |
315 |
aattccatgaatttgacaaggttgttgaacgaattgccctgacactaaccacttctcttgcccttgttttcggctataaacacgaa |
400 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26714884 |
aattccatgaatttgacatggttgttggacgaattgccctgacactaaccacttctcttgcccttgttttcggctataaacacgaa |
26714969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 37 - 400
Target Start/End: Original strand, 26699457 - 26699820
Alignment:
| Q |
37 |
atatagcgaaattggaaggctatgcattcacacatttgtaagcacaaatgctcacattgtttataggtgtaatttttacggaatccatagtgat---agc |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | | || |||||||||| ||||||||||||||||||||||| |||| ||| || | || |
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|
| T |
26699457 |
atatagcgaaattggaaggctatgcattcacacaatcgcaaacacaaatgcttacattgtttataggtgtaattttcgtagaatacatggttgtcgaagt |
26699556 |
T |
|
| Q |
134 |
tgttaaactgaacacgaggtaagaatttgaagcgatattctgtcttgttattgcaagaaaattggaagcttggtttgcacccttgagaccaatcttggtt |
233 |
Q |
| |
|
||| ||||| || | ||||||||| | |||| ||| | | ||||||||| ||||||||||| ||||||||||||||| ||||||||||| || ||||| |
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|
| T |
26699557 |
tgtcaaactcaagatgaggtaagactatgaaacgagactttgtcttgtt---gcaagaaaatttgaagcttggtttgcatccttgagaccagtcctggtt |
26699653 |
T |
|
| Q |
234 |
attgattatgctataacctggaagacacgaacattttctaccttttattggaccataactgcaagtgctgttaggtccacaaattccatgaatttgacaa |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| ||| |||||||||||||| ||||| ||||||||| |
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|
| T |
26699654 |
gttgattatgctataacctggaagacacgaacattttctaccagttcttggatcataactgcaagcgctattaggtccacaaatcccatgtatttgacaa |
26699753 |
T |
|
| Q |
334 |
ggttgttgaacgaattgccctgacactaaccacttctcttgcccttgttttcggctataaacacgaa |
400 |
Q |
| |
|
||||| || | ||||||||||| ||| |||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
26699754 |
ggttgctggaggaattgccctgttactgaccaattctcttgcccatgttttcggctataaactcgaa |
26699820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 37 - 400
Target Start/End: Original strand, 26734620 - 26734974
Alignment:
| Q |
37 |
atatagcgaaattggaaggctatgcattcacacatttgtaagcacaaatgctcacattgtttataggtgtaatttttacggaatccatagtgatagctgt |
136 |
Q |
| |
|
||||||| |||||||||||||||||||||||| | |||| |||||||||| ||| || ||||||||||||||||| | || |||||| ||| |
|
|
| T |
26734620 |
atatagcaaaattggaaggctatgcattcacatgatcgtaaacacaaatgcttacactgactataggtgtaatttttataggattcatagt------tgt |
26734713 |
T |
|
| Q |
137 |
taaactgaacacgaggtaagaatttgaagcgatattctgtcttgttattgcaagaaaattggaagcttggtttgcacccttgagaccaatcttggttatt |
236 |
Q |
| |
|
||||| |||| | ||||||| |||||| ||| | | ||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||| || |
|
|
| T |
26734714 |
caaactcaacatggggtaagactttgaaacgagactttgtcttgtt---gcaagaaaattcgaagcttggtttgcatccttgagaccagtcttggttgtt |
26734810 |
T |
|
| Q |
237 |
gattatgctataacctggaagacacgaacattttctaccttttattggaccataactgcaagtgctgttaggtccacaaattccatgaatttgacaaggt |
336 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| || ||||| |||||| ||||| || |||||||||||||| || || |||||||||||| |
|
|
| T |
26734811 |
gattatgctataacctggaagacatgaacattttctaccagttcttggatcataaccgcaagcactattaggtccacaaatcccgtgtatttgacaaggt |
26734910 |
T |
|
| Q |
337 |
tgttgaacgaattgccctgacactaaccacttctcttgcccttgttttcggctataaacacgaa |
400 |
Q |
| |
|
|| || | ||||||||||| ||| |||| ||| ||||||| ||||||||||||||||| |||| |
|
|
| T |
26734911 |
tgctggaggaattgccctgttactgaccaattcacttgcccatgttttcggctataaactcgaa |
26734974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 170 - 400
Target Start/End: Complemental strand, 26693849 - 26693619
Alignment:
| Q |
170 |
attctgtcttgttattgcaagaaaattggaagcttggtttgcacccttgagaccaatcttggttattgattatgctataacctggaagacacgaacattt |
269 |
Q |
| |
|
||||||| ||||| ||||| |||| ||||||||||||||| |||||||||||||||||||| |||||||| || ||||||| ||||||||| ||| || |
|
|
| T |
26693849 |
attctgttttgttgttgcatgaaagttggaagcttggtttacacccttgagaccaatcttgattattgatcctgttataaccaggaagacacacacactt |
26693750 |
T |
|
| Q |
270 |
tctaccttttattggaccataactgcaagtgctgttaggtccacaaattccatgaatttgacaaggttgttgaacgaattgccctgacactaaccacttc |
369 |
Q |
| |
|
||| || || ||||| | | || || ||| || ||||||||||||||||| |||| |||||||||| |||||||||||| | ||||||||| |
|
|
| T |
26693749 |
tcttccggtttttggattgttaatggaatagctattcggtccacaaattccatgtatttttaaaggttgttggtggaattgccctgaaatcaaccacttc |
26693650 |
T |
|
| Q |
370 |
tcttgcccttgttttcggctataaacacgaa |
400 |
Q |
| |
|
|||||||| |||||||| |||||| |||||| |
|
|
| T |
26693649 |
tcttgcccatgttttcgactataagcacgaa |
26693619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 184 - 400
Target Start/End: Complemental strand, 26689683 - 26689467
Alignment:
| Q |
184 |
ttgcaagaaaattggaagcttggtttgcacccttgagaccaatcttggttattgattatgctataacctggaagacacgaacattttctaccttttattg |
283 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||| ||||||||||| |||| ||| | ||| |||| |||| |||| ||||||| ||||| || ||| |
|
|
| T |
26689683 |
ttgcatgaaagttggaagcttggtttgcacccttgtgaccaatcttgattatggatcctcctaaaaccaggaacacacaaacatttcctaccaattcttg |
26689584 |
T |
|
| Q |
284 |
gaccataactgcaagtgctgttaggtccacaaattccatgaatttgacaaggttgttgaacgaattgccctgacactaaccacttctcttgcccttgttt |
383 |
Q |
| |
|
| | | ||||| ||| |||||||||||||||||||| |||| |||||||||| |||||| ||||| | | ||||||||||||| || ||||| |
|
|
| T |
26689583 |
cattgttaatgcaaaagctattaggtccacaaattccatgtattttgaaaggttgttggtggaattgtcctgaaattgaccacttctcttgtccgtgttt |
26689484 |
T |
|
| Q |
384 |
tcggctataaacacgaa |
400 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
26689483 |
tcggctataaacacgaa |
26689467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 178 - 393
Target Start/End: Original strand, 26676401 - 26676616
Alignment:
| Q |
178 |
ttgttattgcaagaaaattggaagcttggtttgcacccttgagaccaatcttggttattgattatgctataacctggaagacacgaacattttctacctt |
277 |
Q |
| |
|
||||||||||| |||| ||||||| ||||||||||||| |||||||||| ||| |||| ||| |||||||||| |||| |||| |||| |||||||| |
|
|
| T |
26676401 |
ttgttattgcatgaaagttggaagtttggtttgcacccctgagaccaattttgattatcgatcctgctataaccgggaacacacaaacactttctaccag |
26676500 |
T |
|
| Q |
278 |
ttattggaccataactgcaagtgctgttaggtccacaaattccatgaatttgacaaggttgttgaacgaattgccctgacactaaccacttctcttgccc |
377 |
Q |
| |
|
|| ||||| || | ||||| || |||||||||||||||||||| |||| |||||||||| |||||||||||| | ||||||||||||| || |
|
|
| T |
26676501 |
ttcttggattattaatgcaaacactattaggtccacaaattccatgtattttgaaaggttgttggtggaattgccctgaaatcgaccacttctcttgtcc |
26676600 |
T |
|
| Q |
378 |
ttgttttcggctataa |
393 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
26676601 |
atgttttcgactataa |
26676616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 26745030 - 26745115
Alignment:
| Q |
190 |
gaaaattggaagcttggtttgcacccttgagaccaatcttggttattgattatgctataacctggaagacacgaacattttctacc |
275 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| ||||| |||| ||| || ||||||||||||| |||||||| |||||||| |
|
|
| T |
26745030 |
gaaagttggaagcttggtttgcacccttggaaccagtcttgattatcgatcctgatataacctggaaggcacgaacactttctacc |
26745115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 26693978 - 26693914
Alignment:
| Q |
47 |
attggaaggctatgcattcacacatttgtaagcacaaatgctcacattgtttataggtgtaattt |
111 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| || |||| |||||||||||||||| ||||| |
|
|
| T |
26693978 |
attggaaggctatgcattcacacattcgcaagcagaactgcttacattgtttataggtgaaattt |
26693914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 26676258 - 26676328
Alignment:
| Q |
41 |
agcgaaattggaaggctatgcattcacacatttgtaagcacaaatgctcacattgtttataggtgtaattt |
111 |
Q |
| |
|
||||| |||||||||||| |||| |||||| ||||||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
26676258 |
agcgatattggaaggctacacattggcacattcgtaagcagaaatgcttacattgtttataagtgtaattt |
26676328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 400
Target Start/End: Original strand, 26745202 - 26745240
Alignment:
| Q |
362 |
accacttctcttgcccttgttttcggctataaacacgaa |
400 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
26745202 |
accacttctcttgtccatgttttcggctataaacacgaa |
26745240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 342
Target Start/End: Original strand, 26752008 - 26752104
Alignment:
| Q |
246 |
ataacctggaagacacgaacattttctaccttttattggaccataactgcaagtgctgttaggtccacaaattccatgaatttgacaaggttgttga |
342 |
Q |
| |
|
|||||| || ||||| ||||| |||||||| | | |||| ||| ||| ||||| || ||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
26752008 |
ataaccaggtagacaagaacactttctaccagtcaatggatcattactacaagtactattaggcccacaaattccatgaataaaacaaggttgttga |
26752104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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