View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9246_high_16 (Length: 239)
Name: NF9246_high_16
Description: NF9246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9246_high_16 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 30418933 - 30419155
Alignment:
| Q |
17 |
gttgaaaatggatgattcatttatacctcaaagacctccgcctattgtatccttcccaccacctactacctcatcgacccaccatcacttccatctcaga |
116 |
Q |
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| T |
30418933 |
gttgaaaatggatgattcatctatacctcaaagacctccgccgactgtatccttcccaccacctactacctcatcgacccaccatcacttccatctcaga |
30419032 |
T |
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| Q |
117 |
tgaaacctccttattcacaaacactgtaagaaaagacttaccttgttggaccttcctctccttccctgtaaagcctcaccattcgttatttcctttatgt |
216 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30419033 |
tgaaacctccttattcacaaacactgtcagaaaagacttaccttgttggaccttcctctccttccctgtaaagcctcgccattcgttatttcctttatgt |
30419132 |
T |
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| Q |
217 |
ttgccatagtcctgtcctaaccc |
239 |
Q |
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|||||| |||||||||||||||| |
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| T |
30419133 |
ttgccacagtcctgtcctaaccc |
30419155 |
T |
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