View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9246_high_19 (Length: 234)
Name: NF9246_high_19
Description: NF9246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9246_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 12020139 - 12019950
Alignment:
| Q |
17 |
catgttcatttctccactaggtgtcataatgctttatctttcctggtagtttcttatttagttgttcttggcctttccttgcctataacaattaaattat |
116 |
Q |
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| T |
12020139 |
catgttcatttctccactaggtgtcataatgctttatctttcctggtagtttcttatttagttgttcttggcctttctttgcctataacaattaaattat |
12020040 |
T |
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| Q |
117 |
cctcaatcatctgcaatttatatagtaagtacaaatcagttggtagctgcaagaacatttgatatgttgagacacatattcgaactcggg |
206 |
Q |
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| T |
12020039 |
cctcaatcatctgcaatttatatagtaagtacaaatcagttggtagctgcaataacatttgatatgttgcgacacatattcaaactcggg |
12019950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 13172207 - 13172138
Alignment:
| Q |
130 |
caatttatatagtaagtacaaatcagttggtagctgcaagaacatttgatatgttgagacacatattcga |
199 |
Q |
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| T |
13172207 |
caatttatctcgtaagtacaactctcttgatagttgcatagacatttgatatgttgagacacatattcga |
13172138 |
T |
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