View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9246_high_4 (Length: 558)

Name: NF9246_high_4
Description: NF9246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9246_high_4
NF9246_high_4
[»] chr8 (17 HSPs)
chr8 (15-320)||(25389825-25390118)
chr8 (35-171)||(25344498-25344634)
chr8 (216-471)||(25344230-25344501)
chr8 (15-107)||(25676333-25676425)
chr8 (471-539)||(25344086-25344154)
chr8 (476-538)||(25456087-25456149)
chr8 (476-538)||(25808240-25808302)
chr8 (484-537)||(16570818-16570871)
chr8 (484-538)||(3767611-3767665)
chr8 (488-538)||(9040593-9040643)
chr8 (484-539)||(9505193-9505248)
chr8 (403-455)||(9040427-9040479)
chr8 (403-450)||(17722549-17722596)
chr8 (479-538)||(20860361-20860420)
chr8 (484-538)||(32321976-32322030)
chr8 (403-455)||(7956464-7956516)
chr8 (403-455)||(44223451-44223503)
[»] scaffold0070 (4 HSPs)
scaffold0070 (399-471)||(33725-33797)
scaffold0070 (476-538)||(13915-13977)
scaffold0070 (471-539)||(33873-33941)
scaffold0070 (399-450)||(13752-13803)
[»] chr3 (9 HSPs)
chr3 (484-539)||(11503280-11503335)
chr3 (403-471)||(11503444-11503512)
chr3 (475-538)||(46892754-46892817)
chr3 (484-539)||(23659561-23659616)
chr3 (406-471)||(44471020-44471085)
chr3 (484-536)||(27524194-27524246)
chr3 (484-540)||(35847300-35847356)
chr3 (484-527)||(33231476-33231519)
chr3 (476-536)||(26918399-26918459)
[»] chr7 (11 HSPs)
chr7 (401-465)||(3997066-3997130)
chr7 (484-538)||(2197625-2197679)
chr7 (475-524)||(25545176-25545225)
chr7 (488-536)||(12470180-12470228)
chr7 (484-539)||(32971401-32971456)
chr7 (493-536)||(35738090-35738133)
chr7 (487-537)||(12471690-12471740)
chr7 (484-538)||(48070791-48070845)
chr7 (402-467)||(7352491-7352556)
chr7 (411-467)||(12471855-12471911)
chr7 (484-536)||(27226868-27226920)
[»] chr2 (5 HSPs)
chr2 (471-538)||(5526380-5526447)
chr2 (484-539)||(3690059-3690114)
chr2 (403-467)||(29109284-29109348)
chr2 (487-537)||(33036993-33037043)
chr2 (488-536)||(37630511-37630559)
[»] chr4 (6 HSPs)
chr4 (484-538)||(53393110-53393164)
chr4 (484-539)||(8056888-8056943)
chr4 (403-461)||(23108039-23108097)
chr4 (484-538)||(42141417-42141471)
chr4 (475-515)||(8606110-8606150)
chr4 (411-467)||(53393277-53393333)
[»] chr1 (5 HSPs)
chr1 (476-538)||(32678411-32678473)
chr1 (403-467)||(16584986-16585050)
chr1 (484-538)||(17530781-17530835)
chr1 (403-467)||(42010091-42010155)
chr1 (402-467)||(8414700-8414765)
[»] chr6 (5 HSPs)
chr6 (475-538)||(11971578-11971641)
chr6 (488-538)||(11846421-11846471)
chr6 (475-538)||(7176442-7176505)
chr6 (484-527)||(20722413-20722456)
chr6 (484-538)||(23300594-23300648)
[»] scaffold1335 (1 HSPs)
scaffold1335 (484-540)||(907-963)
[»] chr5 (5 HSPs)
chr5 (399-467)||(31895892-31895960)
chr5 (66-100)||(6829495-6829529)
chr5 (479-533)||(7239239-7239293)
chr5 (479-533)||(7244415-7244469)
chr5 (401-467)||(19947706-19947772)
[»] scaffold0590 (1 HSPs)
scaffold0590 (490-538)||(8350-8398)


Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 25390118 - 25389825
Alignment:
Q  15 agagggagcaggaacaacagcccacgaaaaggggaatttaaaaacatgatattttttaaattaattaaagtaaacttacaaaactagtcttgtatttaaa 114  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  25390118 agagggagcaggaacaacaacccacgaaaaggggaatttaaaaacatgatattttttaaattaattaaagtaaacttacaaaactagtctt--------- 25390028  T
Q  115 ttttgtggcaaataggttttttgtcaaataggttgttaacttacacattcatgattttgaattggtgtaaattagctgccgttaagagaatgactatttc 214  Q
     |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25390027 -tttgt--caaataggttttttgtcaaataggttgttaacttacacattcatgattttgaattggtgtaaattagctgccgttaagagaatgactatttc 25389931  T
Q  215 tatttctttaaagggtgctttgatttcatattagcttgctttttacttacttgacttacaaattacatgatctaccaaaggagagttttacatagataat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25389930 tatttctttaaagggtgctttgatttcatattagcttgctttttacttacttgacttacaaattacatgatctaccaaaggagagttttacatagataat 25389831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 25344634 - 25344498
Alignment:
Q  35 cccacgaaaaggggaatttaaaaacatgatattttttaaattaattaaagtaaacttacaaaactagtcttgtatttaaattttgtggcaaataggtttt 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25344634 cccacgaaaaggggaatttaaaaacatgatattttttaaattaattaaagtaaacttacaaaactagtcttgtatttaaattttgtgtcaaataggtttt 25344535  T
Q  135 ttgtcaaataggttgttaacttacacattcatgattt 171  Q
    |||||||||||||||||||||||||||||||||||||    
T  25344534 ttgtcaaataggttgttaacttacacattcatgattt 25344498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 216 - 471
Target Start/End: Complemental strand, 25344501 - 25344230
Alignment:
Q  216 atttctttaaagggtgctttgatttcatattagcttgctttttacttacttgacttacaaattacatgatctacc---------------aaaggagagt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||    
T  25344501 atttctttaaagggtgctttgatttcatattagcttgctttttacttacttgacttacaaattacatgatctacccatttaataagctccaaaggagagt 25344402  T
Q  301 tttacatagataatattctacacatttctcttgttnnnnnnnnnnnnnn-ttctacacattactggtgagagttaacatttaatactatatccttatgtt 399  Q
    |||||||||||||||||||||||||||||||||||               ||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  25344401 tttacatagataatattctacacatttctcttgttaaaaaaaataaaaaattctacacatttctggtgagagttaacatttaatactatgtccttatgtt 25344302  T
Q  400 aattaggggtttaagcggttcggataaaaccaatgaaactgaaagtccaaatcgaaccaaaccgaaaatgta 471  Q
    |||||| ||| ||||||||||||||||||||||| ||| ||||||| ||||| ||| |||||| ||||||||    
T  25344301 aattagcggtgtaagcggttcggataaaaccaataaaattgaaagttcaaattgaatcaaaccaaaaatgta 25344230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 25676425 - 25676333
Alignment:
Q  15 agagggagcaggaacaacagcccacgaaaaggggaatttaaaaacatgatattttttaaattaattaaagtaaacttacaaaactagtcttgt 107  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25676425 agagggagcaggaacaacaacccacgaaaaggggaatttaaaaacatgatattttttaaattaattaaagtaaacttacaaaactagtcttgt 25676333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 471 - 539
Target Start/End: Complemental strand, 25344154 - 25344086
Alignment:
Q  471 aacaaatgaatctaaccgatgctaacctcactccccattttactattattatccctcttcacacacaca 539  Q
    |||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  25344154 aacagatgaatctaaccgatgctaacctcactcctcattttactactattatccctcttcacacacaca 25344086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 476 - 538
Target Start/End: Complemental strand, 25456149 - 25456087
Alignment:
Q  476 atgaatctaaccgatgctaacctcactccccattttactattattatccctcttcacacacac 538  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25456149 atgaatcgaactgatgctaacctcactccccattttactattattatccctcttcacacacac 25456087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 476 - 538
Target Start/End: Complemental strand, 25808302 - 25808240
Alignment:
Q  476 atgaatctaaccgatgctaacctcactccccattttactattattatccctcttcacacacac 538  Q
    ||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  25808302 atgaatcgaaccgatgctaacctcactcctcattttaatattattatccctcttcacacacac 25808240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 484 - 537
Target Start/End: Complemental strand, 16570871 - 16570818
Alignment:
Q  484 aaccgatgctaacctcactccccattttactattattatccctcttcacacaca 537  Q
    ||||||||||||| ||||||||||||||| |||||||||||||| |||||||||    
T  16570871 aaccgatgctaacttcactccccattttagtattattatccctcctcacacaca 16570818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 484 - 538
Target Start/End: Complemental strand, 3767665 - 3767611
Alignment:
Q  484 aaccgatgctaacctcactccccattttactattattatccctcttcacacacac 538  Q
    ||||||||||||||||||||||||||||| || ||||||||||  ||||||||||    
T  3767665 aaccgatgctaacctcactccccattttagtaatattatcccttctcacacacac 3767611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 488 - 538
Target Start/End: Original strand, 9040593 - 9040643
Alignment:
Q  488 gatgctaacctcactccccattttactattattatccctcttcacacacac 538  Q
    |||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  9040593 gatgctaaccccacttcccattttactattattatccctcctcacacacac 9040643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 539
Target Start/End: Original strand, 9505193 - 9505248
Alignment:
Q  484 aaccgatgctaacctcactccccattttactattattatccctcttcacacacaca 539  Q
    ||||||||| ||||||||||||||||||| || |||||||| || |||||||||||    
T  9505193 aaccgatgccaacctcactccccattttagtaatattatccttcctcacacacaca 9505248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 455
Target Start/End: Original strand, 9040427 - 9040479
Alignment:
Q  403 taggggtttaagcggttcggataaaaccaatgaaactgaaagtccaaatcgaa 455  Q
    ||||||| |||||||||||||||||||| ||||||  ||||||||||| ||||    
T  9040427 taggggtataagcggttcggataaaaccgatgaaatcgaaagtccaaaccgaa 9040479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 450
Target Start/End: Complemental strand, 17722596 - 17722549
Alignment:
Q  403 taggggtttaagcggttcggataaaaccaatgaaactgaaagtccaaa 450  Q
    ||||||| |||  ||||||||||||||||||||||| |||||||||||    
T  17722596 taggggtgtaaatggttcggataaaaccaatgaaaccgaaagtccaaa 17722549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 538
Target Start/End: Complemental strand, 20860420 - 20860361
Alignment:
Q  479 aatctaaccgatgctaacctcactccccattttactattattatccctcttcacacacac 538  Q
    |||| |||||||||||| |||||||| ||||||| || ||||||| ||| ||||||||||    
T  20860420 aatcaaaccgatgctaatctcactcctcattttagtaatattatcactcctcacacacac 20860361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 538
Target Start/End: Original strand, 32321976 - 32322030
Alignment:
Q  484 aaccgatgctaacctcactccccattttactattattatccctcttcacacacac 538  Q
    |||| ||||||||||||||| |||||||| || ||||||| ||| ||||||||||    
T  32321976 aaccaatgctaacctcactctccattttagtaatattatctctcctcacacacac 32322030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 455
Target Start/End: Complemental strand, 7956516 - 7956464
Alignment:
Q  403 taggggtttaagcggttcggataaaaccaatgaaactgaaagtccaaatcgaa 455  Q
    ||||||| |||| |||||||| |||||||| ||||| ||||||||||| ||||    
T  7956516 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaa 7956464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 455
Target Start/End: Complemental strand, 44223503 - 44223451
Alignment:
Q  403 taggggtttaagcggttcggataaaaccaatgaaactgaaagtccaaatcgaa 455  Q
    ||||||| |||| |||||||| |||||||| ||||| ||||||||||| ||||    
T  44223503 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaa 44223451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 399 - 471
Target Start/End: Original strand, 33725 - 33797
Alignment:
Q  399 taattaggggtttaagcggttcggataaaaccaatgaaactgaaagtccaaatcgaaccaaaccgaaaatgta 471  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33725 taattaggggtgtaagtggttcggataaaaccaatgaaactgaaagtccaaattgaaccaaaccgaaaatgta 33797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 476 - 538
Target Start/End: Original strand, 13915 - 13977
Alignment:
Q  476 atgaatctaaccgatgctaacctcactccccattttactattattatccctcttcacacacac 538  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13915 atgaatcgaaccgatgctaacctcactccccattttactattattatacctcttcacacacac 13977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 471 - 539
Target Start/End: Original strand, 33873 - 33941
Alignment:
Q  471 aacaaatgaatctaaccgatgctaacctcactccccattttactattattatccctcttcacacacaca 539  Q
    |||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  33873 aacagatgaatctaactgatggtaacctcactccccattttactattattatccctcttcaaacacaca 33941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 450
Target Start/End: Original strand, 13752 - 13803
Alignment:
Q  399 taattaggggtttaagcggttcggataaaaccaatgaaactgaaagtccaaa 450  Q
    ||||||||||| ||||||||||||| |||| |||||||||| ||||||||||    
T  13752 taattaggggtgtaagcggttcggacaaaatcaatgaaactaaaagtccaaa 13803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 484 - 539
Target Start/End: Complemental strand, 11503335 - 11503280
Alignment:
Q  484 aaccgatgctaacctcactccccattttactattattatccctcttcacacacaca 539  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11503335 aacccatgctaacctcactccccattttactattattatccctcctcacacacaca 11503280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 403 - 471
Target Start/End: Complemental strand, 11503512 - 11503444
Alignment:
Q  403 taggggtttaagcggttcggataaaaccaatgaaactgaaagtccaaatcgaaccaaaccgaaaatgta 471  Q
    ||||||| |||||||||  ||||||||| ||||||||||||||||||| ||||||||||| ||||||||    
T  11503512 taggggtgtaagcggttaagataaaaccgatgaaactgaaagtccaaaccgaaccaaaccaaaaatgta 11503444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 475 - 538
Target Start/End: Original strand, 46892754 - 46892817
Alignment:
Q  475 aatgaatctaaccgatgctaacctcactccccattttactattattatccctcttcacacacac 538  Q
    |||||| | ||||||||||||||||||||| ||||||| || ||||||||||| ||||||||||    
T  46892754 aatgaaccaaaccgatgctaacctcactcctcattttagtaatattatccctcatcacacacac 46892817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 539
Target Start/End: Original strand, 23659561 - 23659616
Alignment:
Q  484 aaccgatgctaacctcactccccattttactattattatccctcttcacacacaca 539  Q
    ||||||||||||| |||||| |||||||| || ||||||||||| |||||||||||    
T  23659561 aaccgatgctaacatcactctccattttagtaatattatccctcctcacacacaca 23659616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 406 - 471
Target Start/End: Original strand, 44471020 - 44471085
Alignment:
Q  406 gggtttaagcggttcggataaaaccaatgaaactgaaagtccaaatcgaaccaaaccgaaaatgta 471  Q
    |||| |||| |||||||| |||||| ||||||  |||| |||||| ||||||||||||||||||||    
T  44471020 gggtgtaagtggttcggacaaaaccgatgaaatcgaaaatccaaaccgaaccaaaccgaaaatgta 44471085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 27524194 - 27524246
Alignment:
Q  484 aaccgatgctaacctcactccccattttactattattatccctcttcacacac 536  Q
    |||| ||| ||||| ||||||||||||||||||||||||| ||| ||||||||    
T  27524194 aaccaatggtaaccccactccccattttactattattatctctcctcacacac 27524246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 540
Target Start/End: Original strand, 35847300 - 35847356
Alignment:
Q  484 aaccgatgctaacctcactccccattttactattattatccctcttcacacacacat 540  Q
    |||||||||||||||||||| |||||||| || ||||||| ||| || |||||||||    
T  35847300 aaccgatgctaacctcactctccattttattaatattatctctcatctcacacacat 35847356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 527
Target Start/End: Complemental strand, 33231519 - 33231476
Alignment:
Q  484 aaccgatgctaacctcactccccattttactattattatccctc 527  Q
    ||||||||||||||||||||||||||||| || |||||| ||||    
T  33231519 aaccgatgctaacctcactccccattttagtaatattatacctc 33231476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 536
Target Start/End: Complemental strand, 26918459 - 26918399
Alignment:
Q  476 atgaatctaaccgatgctaacctcactccccattttactattattatccctcttcacacac 536  Q
    ||||||| ||| ||||||||||  |||||| |||||| || ||||||||||| ||||||||    
T  26918459 atgaatcgaactgatgctaaccctactccctattttagtaatattatccctcctcacacac 26918399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 401 - 465
Target Start/End: Complemental strand, 3997130 - 3997066
Alignment:
Q  401 attaggggtttaagcggttcggataaaaccaatgaaactgaaagtccaaatcgaaccaaaccgaa 465  Q
    ||||||||| |||| |||||||| |||||||||||||| ||||||||||| || |||||||||||    
T  3997130 attaggggtgtaagtggttcggacaaaaccaatgaaaccgaaagtccaaaccgtaccaaaccgaa 3997066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 538
Target Start/End: Complemental strand, 2197679 - 2197625
Alignment:
Q  484 aaccgatgctaacctcactccccattttactattattatccctcttcacacacac 538  Q
    ||||||||||||| |||||||||||||||||| |||||||| || || |||||||    
T  2197679 aaccgatgctaacttcactccccattttactaatattatccttcctcgcacacac 2197625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 475 - 524
Target Start/End: Complemental strand, 25545225 - 25545176
Alignment:
Q  475 aatgaatctaaccgatgctaacctcactccccattttactattattatcc 524  Q
    |||||||| |||| |||||||||||||||||||||||| || ||||||||    
T  25545225 aatgaatcgaaccaatgctaacctcactccccattttagtaatattatcc 25545176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 536
Target Start/End: Complemental strand, 12470228 - 12470180
Alignment:
Q  488 gatgctaacctcactccccattttactattattatccctcttcacacac 536  Q
    |||||||| |||| ||||||||||| || ||||||||||||||||||||    
T  12470228 gatgctaatctcagtccccattttagtaatattatccctcttcacacac 12470180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 539
Target Start/End: Original strand, 32971401 - 32971456
Alignment:
Q  484 aaccgatgctaacctcactccccattttactattattatccctcttcacacacaca 539  Q
    |||||||||||||||||||| |||||||   | ||||||||||| |||||||||||    
T  32971401 aaccgatgctaacctcactctccatttttgaaatattatccctcctcacacacaca 32971456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 536
Target Start/End: Complemental strand, 35738133 - 35738090
Alignment:
Q  493 taacctcactccccattttactattattatccctcttcacacac 536  Q
    ||||| ||||||||||||||||| ||||||||||| ||||||||    
T  35738133 taaccccactccccattttactaatattatccctcatcacacac 35738090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 537
Target Start/End: Complemental strand, 12471740 - 12471690
Alignment:
Q  487 cgatgctaacctcactccccattttactattattatccctcttcacacaca 537  Q
    ||||| |||||||||||| ||||||| || ||||||||||||||| |||||    
T  12471740 cgatgttaacctcactcctcattttagtaatattatccctcttcatacaca 12471690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 538
Target Start/End: Original strand, 48070791 - 48070845
Alignment:
Q  484 aaccgatgctaacctcactccccattttactattattatccctcttcacacacac 538  Q
    |||||||| ||||||||||| |||||| | || || |||||||||||||||||||    
T  48070791 aaccgatgttaacctcactcaccatttcagtaataatatccctcttcacacacac 48070845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 467
Target Start/End: Complemental strand, 7352556 - 7352491
Alignment:
Q  402 ttaggggtttaagcggttcggataaaaccaatgaaactgaaagtccaaatcgaaccaaaccgaaaa 467  Q
    |||||||| |||  ||||| || |||||||| ||||| ||||||||||||| |||| |||||||||    
T  7352556 ttaggggtgtaattggttcagacaaaaccaacgaaaccgaaagtccaaatcaaaccgaaccgaaaa 7352491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 467
Target Start/End: Complemental strand, 12471911 - 12471855
Alignment:
Q  411 taagcggttcggataaaaccaatgaaactgaaagtccaaatcgaaccaaaccgaaaa 467  Q
    |||| ||||||||||||||| |||||| ||||| |||||| ||||| |||| |||||    
T  12471911 taagtggttcggataaaaccgatgaaattgaaaatccaaaccgaacaaaactgaaaa 12471855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 536
Target Start/End: Complemental strand, 27226920 - 27226868
Alignment:
Q  484 aaccgatgctaacctcactccccattttactattattatccctcttcacacac 536  Q
    |||||||| ||| ||||||| ||||||||||| ||||||||||| | ||||||    
T  27226920 aaccgatggtaatctcactctccattttactaatattatccctcctaacacac 27226868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 471 - 538
Target Start/End: Original strand, 5526380 - 5526447
Alignment:
Q  471 aacaaatgaatctaaccgatgctaacctcactccccattttactattattatccctcttcacacacac 538  Q
    |||| ||||| | |||||||||||| |||||||||||||||| |||||||||||||| | ||||||||    
T  5526380 aacagatgaaccgaaccgatgctaatctcactccccattttagtattattatccctccttacacacac 5526447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 539
Target Start/End: Complemental strand, 3690114 - 3690059
Alignment:
Q  484 aaccgatgctaacctcactccccattttactattattatccctcttcacacacaca 539  Q
    ||||||||||||||| ||||||||||||| || ||||||||||| || ||||||||    
T  3690114 aaccgatgctaaccttactccccattttagtaatattatccctcctcgcacacaca 3690059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 467
Target Start/End: Complemental strand, 29109348 - 29109284
Alignment:
Q  403 taggggtttaagcggttcggataaaaccaatgaaactgaaagtccaaatcgaaccaaaccgaaaa 467  Q
    ||||||| |||| |||||||| |||||  |||||||||||| |||||| |||||||||| |||||    
T  29109348 taggggtgtaagtggttcggacaaaactgatgaaactgaaaatccaaaccgaaccaaactgaaaa 29109284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 537
Target Start/End: Complemental strand, 33037043 - 33036993
Alignment:
Q  487 cgatgctaacctcactccccattttactattattatccctcttcacacaca 537  Q
    |||||||||| |||||| |||||||| || ||||||||||| |||||||||    
T  33037043 cgatgctaacttcactctccattttagtaatattatccctcctcacacaca 33036993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 536
Target Start/End: Original strand, 37630511 - 37630559
Alignment:
Q  488 gatgctaacctcactccccattttactattattatccctcttcacacac 536  Q
    ||||||||| |||||||||| |||| || ||||||||||| ||||||||    
T  37630511 gatgctaacatcactccccactttagtaatattatccctcctcacacac 37630559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 484 - 538
Target Start/End: Complemental strand, 53393164 - 53393110
Alignment:
Q  484 aaccgatgctaacctcactccccattttactattattatccctcttcacacacac 538  Q
    |||||||||||||||||||  |||||||| || ||||||||||||||||||||||    
T  53393164 aaccgatgctaacctcactttccattttagtaatattatccctcttcacacacac 53393110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 539
Target Start/End: Original strand, 8056888 - 8056943
Alignment:
Q  484 aaccgatgctaacctcactccccattttactattattatccctcttcacacacaca 539  Q
    ||||||| |||||| ||||||||||||||||| |||||||| || |||||||||||    
T  8056888 aaccgatcctaaccccactccccattttactaatattatccttcctcacacacaca 8056943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 461
Target Start/End: Complemental strand, 23108097 - 23108039
Alignment:
Q  403 taggggtttaagcggttcggataaaaccaatgaaactgaaagtccaaatcgaaccaaac 461  Q
    ||||||| |||| |||||||| |||||||| ||||| ||||||||||| ||||||||||    
T  23108097 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaac 23108039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 538
Target Start/End: Original strand, 42141417 - 42141471
Alignment:
Q  484 aaccgatgctaacctcactccccattttactattattatccctcttcacacacac 538  Q
    |||||||||||| |||||||| ||||||| || |||||| |||| ||||||||||    
T  42141417 aaccgatgctaaactcactcctcattttagtaatattatacctcctcacacacac 42141471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 515
Target Start/End: Complemental strand, 8606150 - 8606110
Alignment:
Q  475 aatgaatctaaccgatgctaacctcactccccattttacta 515  Q
    |||||||| |||||||| ||||| |||||||||||||||||    
T  8606150 aatgaatcgaaccgatggtaaccacactccccattttacta 8606110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 467
Target Start/End: Complemental strand, 53393333 - 53393277
Alignment:
Q  411 taagcggttcggataaaaccaatgaaactgaaagtccaaatcgaaccaaaccgaaaa 467  Q
    |||| |||||||| |||||| ||||||| |||| |||||| ||||||||||| ||||    
T  53393333 taagtggttcggacaaaaccgatgaaaccgaaaatccaaaccgaaccaaaccaaaaa 53393277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 476 - 538
Target Start/End: Complemental strand, 32678473 - 32678411
Alignment:
Q  476 atgaatctaaccgatgctaacctcactccccattttactattattatccctcttcacacacac 538  Q
    ||||||| ||| ||||||||||||||||||||||||| || ||||||||||| | ||||||||    
T  32678473 atgaatcgaactgatgctaacctcactccccattttagtaatattatccctcataacacacac 32678411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 467
Target Start/End: Complemental strand, 16585050 - 16584986
Alignment:
Q  403 taggggtttaagcggttcggataaaaccaatgaaactgaaagtccaaatcgaaccaaaccgaaaa 467  Q
    ||||||| |||| |||||||| |||||||| ||||| ||||||||||| ||||||||| ||||||    
T  16585050 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaaacgaaaa 16584986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 538
Target Start/End: Original strand, 17530781 - 17530835
Alignment:
Q  484 aaccgatgctaacctcactccccattttactattattatccctcttcacacacac 538  Q
    ||||||||||||| |||||| |||||||| || |||||||| |||||||||||||    
T  17530781 aaccgatgctaacttcactctccattttagtaatattatccttcttcacacacac 17530835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 467
Target Start/End: Complemental strand, 42010155 - 42010091
Alignment:
Q  403 taggggtttaagcggttcggataaaaccaatgaaactgaaagtccaaatcgaaccaaaccgaaaa 467  Q
    ||||||| |||||||||||||| ||||||| ||||| || ||||||||  | |||||||||||||    
T  42010155 taggggtgtaagcggttcggattaaaccaacgaaaccgatagtccaaactggaccaaaccgaaaa 42010091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 467
Target Start/End: Complemental strand, 8414765 - 8414700
Alignment:
Q  402 ttaggggtttaagcggttcggataaaaccaatgaaactgaaagtccaaatcgaaccaaaccgaaaa 467  Q
    |||||| | |||| |||||||| |||||| |||||||||||| ||||||  |||| ||||||||||    
T  8414765 ttagggatgtaagtggttcggacaaaaccgatgaaactgaaaatccaaactgaacaaaaccgaaaa 8414700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 475 - 538
Target Start/End: Original strand, 11971578 - 11971641
Alignment:
Q  475 aatgaatctaaccgatgctaacctcactccccattttactattattatccctcttcacacacac 538  Q
    |||||| | ||| ||||||| ||||||||||||||||| || ||||||||||| ||||||||||    
T  11971578 aatgaaccaaactgatgctatcctcactccccattttagtaatattatccctcctcacacacac 11971641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 488 - 538
Target Start/End: Original strand, 11846421 - 11846471
Alignment:
Q  488 gatgctaacctcactccccattttactattattatccctcttcacacacac 538  Q
    ||||||| ||||||||||||||||| || ||||||||||| ||||||||||    
T  11846421 gatgctatcctcactccccattttagtaatattatccctcctcacacacac 11846471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 538
Target Start/End: Complemental strand, 7176505 - 7176442
Alignment:
Q  475 aatgaatctaaccgatgctaacctcactccccattttactattattatccctcttcacacacac 538  Q
    |||||| | ||| ||||||||||||||||||||||||| || ||||||| ||| ||||| ||||    
T  7176505 aatgaaccgaacagatgctaacctcactccccattttagtaatattatctctcctcacaaacac 7176442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 527
Target Start/End: Original strand, 20722413 - 20722456
Alignment:
Q  484 aaccgatgctaacctcactccccattttactattattatccctc 527  Q
    |||||||||||||| |||||||||||||||||  ||||||||||    
T  20722413 aaccgatgctaaccccactccccattttactaacattatccctc 20722456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 538
Target Start/End: Original strand, 23300594 - 23300648
Alignment:
Q  484 aaccgatgctaacctcactccccattttactattattatccctcttcacacacac 538  Q
    ||||||||||||| |||||| |||||||| || ||||||||||| ||| ||||||    
T  23300594 aaccgatgctaacttcactctccattttagtaatattatccctcctcatacacac 23300648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1335 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1335
Description:

Target: scaffold1335; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 540
Target Start/End: Complemental strand, 963 - 907
Alignment:
Q  484 aaccgatgctaacctcactccccattttactattattatccctcttcacacacacat 540  Q
    |||||||||||||||||||| |||||||| || ||||||| ||| || |||||||||    
T  963 aaccgatgctaacctcactctccattttattaatattatctctcatctcacacacat 907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 467
Target Start/End: Original strand, 31895892 - 31895960
Alignment:
Q  399 taattaggggtttaagcggttcggataaaaccaatgaaactgaaagtccaaatcgaaccaaaccgaaaa 467  Q
    ||||||||||| |||| |||||||| ||||||||  |||  |||||||||||  |||||||||||||||    
T  31895892 taattaggggtgtaagtggttcggacaaaaccaacaaaatcgaaagtccaaactgaaccaaaccgaaaa 31895960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 100
Target Start/End: Original strand, 6829495 - 6829529
Alignment:
Q  66 ttttttaaattaattaaagtaaacttacaaaacta 100  Q
    ||||||||||||||||||| |||||||||||||||    
T  6829495 ttttttaaattaattaaaggaaacttacaaaacta 6829529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 533
Target Start/End: Complemental strand, 7239293 - 7239239
Alignment:
Q  479 aatctaaccgatgctaacctcactccccattttactattattatccctcttcaca 533  Q
    |||| ||||||||||||||||||| ||||||||| || ||||||| ||| |||||    
T  7239293 aatcgaaccgatgctaacctcacttcccattttagtaatattatctctcctcaca 7239239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 533
Target Start/End: Complemental strand, 7244469 - 7244415
Alignment:
Q  479 aatctaaccgatgctaacctcactccccattttactattattatccctcttcaca 533  Q
    |||| ||||||||||||||||||| ||||||||| || ||||||| ||| |||||    
T  7244469 aatcgaaccgatgctaacctcacttcccattttagtaatattatctctcctcaca 7244415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 467
Target Start/End: Original strand, 19947706 - 19947772
Alignment:
Q  401 attaggggtttaagcggttcggataaaaccaatgaaactgaaagtccaaatcgaaccaaaccgaaaa 467  Q
    |||| |||| |||| |||||||| |||| ||| ||| | ||||||||||| ||||||||||||||||    
T  19947706 attacgggtgtaagtggttcggacaaaatcaacgaatccgaaagtccaaaccgaaccaaaccgaaaa 19947772  T

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Target: scaffold0590 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 538
Target Start/End: Original strand, 8350 - 8398
Alignment:
Q  490 tgctaacctcactccccattttactattattatccctcttcacacacac 538  Q
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T  8350 tgctaacctcactccgcattttggtaatattatccctcctcacacacac 8398  T

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