View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9246_high_6 (Length: 488)
Name: NF9246_high_6
Description: NF9246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9246_high_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 488
Target Start/End: Original strand, 4050279 - 4050747
Alignment:
| Q |
19 |
atcatagtaactgcatgcttattggctatactatgaaaatagcgcaacttatatatttttggagctgagaaaagatgtctctttgaaatatgcatcacaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4050279 |
atcatagtaactgcatgcttattggctatactatgaaaatagcgcaacttgtatatttttggagctgagaaaagatgtctctttgaaatatgcatcacaa |
4050378 |
T |
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| Q |
119 |
tgttatcaaatagtggcggccatatatagcagcagcatagcactacagactatagcgtagcggaatttgnnnnnnntcgttattgttccaccatatgcta |
218 |
Q |
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| T |
4050379 |
tgttattaaatagtggcggccatatatagcagcagcatagcactatagactatagcgtagcggaatttgaaaaaaatcgttattgtttcaccatatgcta |
4050478 |
T |
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| Q |
219 |
tttaatccaaaatattgtcaaatagcaggtatatggcactatatcactgttttgtaacagaatttgaacaaaccactatttttggcaatccgcggttaac |
318 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4050479 |
tttagtccaaaatattgtcaaatagcaggtatatggcgctatatcactgttgtgtaacagaatttgaacaaaccactatttttggcaatccgcggttaac |
4050578 |
T |
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| Q |
319 |
aacactgattgatcacgatccagaaatttgaaatgcagctattgaaaaagaactattagaagatgatggaacaaacaaaatgctatagaagttagtcttc |
418 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4050579 |
aacactgagatatcacgatccagaaatttgaaatgcagctattgaaaaagaactattagaagatgatggaacaaacaaaatgctatagaag-tagtcttc |
4050677 |
T |
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| Q |
419 |
attgttttattagtaaaagttagttcctaccatatacctatgatgaatacctaagactttggtaaattca |
488 |
Q |
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| T |
4050678 |
attgttttattagtaaaagttagttcctaccatatacctatgatgaatacctaagactttggtaaattca |
4050747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 19390957 - 19391030
Alignment:
| Q |
196 |
cgttattgttccaccatatgctatttaatccaaaatattgtcaaatagcaggtata-tggcactatatcactgt |
268 |
Q |
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| T |
19390957 |
cgttgttgttccacaataagctatttagtacaaagtattgtcaaatagcagttatagtggcgctatagcactgt |
19391030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 300
Target Start/End: Complemental strand, 33532535 - 33532434
Alignment:
| Q |
200 |
attgttccaccatatgctatttaatccaaaatattgtcaaatagcaggtata-tggcactatatcactgttttgtaacagaatttgaacaaaccactatt |
298 |
Q |
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| T |
33532535 |
attgttacactatacgctatttagtacagaatgttgtcaaacagcagctatagttgcgctatagcactgttgagtagcagaatttgaacaaaccgctatt |
33532436 |
T |
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| Q |
299 |
tt |
300 |
Q |
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|| |
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| T |
33532435 |
tt |
33532434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 300
Target Start/End: Original strand, 16495118 - 16495147
Alignment:
| Q |
271 |
tgtaacagaatttgaacaaaccactatttt |
300 |
Q |
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| T |
16495118 |
tgtaacagaatttgaacaaaccactatttt |
16495147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 325
Target Start/End: Original strand, 36323199 - 36323248
Alignment:
| Q |
276 |
cagaatttgaacaaaccactatttttggcaatccgcggttaacaacactg |
325 |
Q |
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| T |
36323199 |
cagaatttgaacaaaccactatttttcgccatctgcgattgacaacactg |
36323248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 325
Target Start/End: Complemental strand, 24673442 - 24673342
Alignment:
| Q |
226 |
caaaatattgtcaaatagcaggtatat-ggcactatatcactgttttgtaacagaatttgaacaaaccactatttttggcaatccgcggttaacaacact |
324 |
Q |
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| T |
24673442 |
caaaatgttgtcaaatagccgctatagcggcaccatatcactgttgcatagctgaatttgaacaaaccactattttctgtgatccgcaattaacaacact |
24673343 |
T |
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| Q |
325 |
g |
325 |
Q |
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| T |
24673342 |
g |
24673342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 33751209 - 33751173
Alignment:
| Q |
272 |
gtaacagaatttgaacaaaccactatttttggcaatc |
308 |
Q |
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| T |
33751209 |
gtaacagaatttgaacaaaccgctattttttgcaatc |
33751173 |
T |
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