View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9246_high_8 (Length: 467)
Name: NF9246_high_8
Description: NF9246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9246_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 40804162 - 40804462
Alignment:
| Q |
11 |
tggtgttgatataacatgaaatgatggtttccaaaacgttatttgtgagtttgattttgaagggatccaatttctcatagcctaatttctttgctgcttg |
110 |
Q |
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| T |
40804162 |
tggtcttgatataacatgaaatgatggtttccaaaacgttatttgtgagtttgattttgaagggatccaatttctcatagcctaatttctttgctgcttg |
40804261 |
T |
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| Q |
111 |
ttttatttattttccattgacataaaatccatcgacataaaatttgaacatgcatgcatgtctggattcacattaagaatgatagaatcacggcgagtca |
210 |
Q |
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| T |
40804262 |
ttttatttattttccattgacataaaatccatcgacataaaatttgaacatgcatgcatgtctggattcacattaagaatgatagaatcacggcgagtca |
40804361 |
T |
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| Q |
211 |
ccacgtttgaattaaagttgcactttggagcacattgtcactatgattttaccaaactcaccgttcatccaaacatatgttaagagttacaaagcctttc |
310 |
Q |
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| T |
40804362 |
ccacgtttggactaaagttgcactttggagcacattgtcactgtgattttaccaaactcaccgttcatccaaacatacgttaagagttacaaagcctttc |
40804461 |
T |
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| Q |
311 |
t |
311 |
Q |
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| T |
40804462 |
t |
40804462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 309 - 467
Target Start/End: Original strand, 40804658 - 40804816
Alignment:
| Q |
309 |
tctcaatttcctctctatgttattcttcttgtcattcttttacattctcacttgtaatgattactattcctcctacttgtgttgatcacaattccgttca |
408 |
Q |
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| T |
40804658 |
tctcaatttcctctctatgttattcttcttgtcattcttttacattctcacttgtaatgattactattcctcctacttgtgttgatcacaattccgttca |
40804757 |
T |
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| Q |
409 |
ataaaaatagtaaccttcttcaatacttgtatcatcacagaaactcaaattttaaccaa |
467 |
Q |
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| T |
40804758 |
ataaaaatagtaaccttcttcaatacttgtatcatcacagaaactcaaattttaaccaa |
40804816 |
T |
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