View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9246_low_18 (Length: 477)
Name: NF9246_low_18
Description: NF9246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9246_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 8 - 461
Target Start/End: Complemental strand, 44881397 - 44880942
Alignment:
| Q |
8 |
agattagccagtcatcgacaaagatgctgaataacatatatagttacaaaaggaaaagtaattaaaattttatgaatattatttttatt--gagttttca |
105 |
Q |
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| T |
44881397 |
agattagtcagtcatcgacaaagatgatgaataacatatatagttacaaaaggaaaagtaattaaaattttatgaatattatttttattttgagttttca |
44881298 |
T |
|
| Q |
106 |
tcatattccatctctcttctaacgtattgaattttccttctcaatccaagtagaaactctcctatatctcatgaagcaattttggagcttgacacaacag |
205 |
Q |
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| T |
44881297 |
tcatattccatctctcttctaacgtattgaaatttctttctcaatccaagtagaaactctcctatatctcatgaagcaattttggagcttgacacaacag |
44881198 |
T |
|
| Q |
206 |
gaaacctcattctcatggacnnnnnnntcaccatatgggccacaaacacttcaaatgctaatgtagaatcagcaaccatgtcagaatcaggcaacttcat |
305 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44881197 |
gaaacctcattctcatggacaaaaaaatcaccatatgggccacaaacacttcaaatgctaatgtagaatcagcaaccatgtcagaatcaggcaacttcat |
44881098 |
T |
|
| Q |
306 |
ccttcacaacataaataaccaccctatatggcagagtttttctcaaccttcaaacacactcctcccaaaccagcctctaacagtttcttcagaattaaca |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44881097 |
ccttcacaacataaataaccaccctatatggcagagtttttctcaaccttcaaacacactcctcccaaaccagcctctaacagtttcttcagaattaaca |
44880998 |
T |
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| Q |
406 |
tcacaaaaatcttcatctcatggtggctattatgctctcaaaatgcttcaacaacc |
461 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44880997 |
tcaccaaaatcttcatctcatggtggctattatgctctcaaaatgcttcaacaacc |
44880942 |
T |
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