View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9246_low_22 (Length: 441)
Name: NF9246_low_22
Description: NF9246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9246_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 21 - 423
Target Start/End: Original strand, 36970419 - 36970822
Alignment:
| Q |
21 |
tacagtgctttatatcaaagatagaagaaaggaaagccccttaattttaatttgcaagtaaattaattacctcacatacatccaacaaaattagaaatgt |
120 |
Q |
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| T |
36970419 |
tacagtgctttatatcaaagatagaagaaaggaaagcaccttaattttaatttgcaagtaaattaattacctcacatacatccaacaaaattagaaatgt |
36970518 |
T |
|
| Q |
121 |
tcttcttcattgattccatcttcagaaaaggaaaggaactacaaatgaactccaagattgatttgaaggagcaaaccctacttaaagatacgctagaaaa |
220 |
Q |
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| T |
36970519 |
tcttcttcattgattccatcttcagaaaaggaaaggaactacatattaactccaagattgatttgaaggagcaaaccctacttaaagatactctagaaaa |
36970618 |
T |
|
| Q |
221 |
gcgtggattttatgagttctcttttgtagtccaatccgtaacgaaatagaagc-nnnnnnncatttgacttttaaaacccttttaactgcttatattttc |
319 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
36970619 |
gcatggattttatgagttctcttttgtagtccaatccgtaacgaaatagaagcaaaaaaaacatttgacttttaaaacccttttaactgcttgtattttc |
36970718 |
T |
|
| Q |
320 |
ttaccgatgactactatgtttggtacttggatttgttgcatcttcttcaaacttgtcttttgcagtttcatgaagtttgttctgatttattctaataagt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36970719 |
ttaccgatgactactatgtttggtacttggatttgttgcatcttcttcaaacttgtcttttgcagtttcatgaagtttgttctgatttattctaataagt |
36970818 |
T |
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| Q |
420 |
tcag |
423 |
Q |
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|||| |
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| T |
36970819 |
tcag |
36970822 |
T |
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