View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9246_low_24 (Length: 429)
Name: NF9246_low_24
Description: NF9246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9246_low_24 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 411
Target Start/End: Complemental strand, 19433534 - 19433140
Alignment:
| Q |
17 |
agaaggaaatacgaatatgagagtccttccggttcaacatttcggcaagtgttataatagtttatgaaccggaagggtagaatgatggtggtgttgtaaa |
116 |
Q |
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| T |
19433534 |
agaaggaaatacgaatatgagagtccttccagttcaacattttggcaagtgttataatagtttatgaacgggaagggtagaatgatggtggtgttgtaga |
19433435 |
T |
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| Q |
117 |
agtgactgatcgggttctacgttgctcatctaagttacataaatggggtaagaggaaaaatattcactttcaagaggagatccaacagtgcactcgcctt |
216 |
Q |
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| T |
19433434 |
agtgactgatcgggttctgcgttgctcatctaagttacatcgatggggtaagaggaaaaaaattcactttcaagaggagatccaacagtgcactcgcctt |
19433335 |
T |
|
| Q |
217 |
cttgaatcaattaggagctcaccaaacggtgtgaattcagttcggtttcgaaaggagattgagcgccatgcccgactgcttgtacaggaggaggaagttt |
316 |
Q |
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| T |
19433334 |
cttgaatcaattaggagctcacctaacggtgtgaattcagttcagtttcgaaaggagattgagcgccatgcccgactgcttgtacaggaggaggaagttt |
19433235 |
T |
|
| Q |
317 |
tttggaagcaaagacttaaaatgcattggatgaaagatggggatatgaacactaagttctttcatatgtcggcaactgtaagaaaaaagactaag |
411 |
Q |
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| T |
19433234 |
tttggaagcaaagacttaaaatgcattggatgaaagatggggatatgaacactaagttctttcatatgtcggcaaccgtaagaaaaaagactaag |
19433140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 178 - 392
Target Start/End: Complemental strand, 13077278 - 13077067
Alignment:
| Q |
178 |
attcactttcaagaggagatccaacagtgcactcgccttcttgaatcaattaggagctcaccaaacggtgtgaattcagttcggtttcgaaaggagattg |
277 |
Q |
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| T |
13077278 |
attcactttcaggaggagatacaacaatgcactcgcattcttgaatcaattaggagctcacctaatggcatgaatacaactaggttcctcaaagagaatg |
13077179 |
T |
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| Q |
278 |
agcgccatgcccgactgcttgtacaggaggaggaagttttttggaagcaaagacttaaaatgcattggatgaaagatggggatatgaacactaagttctt |
377 |
Q |
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|||||||||||||| || ||||||| ||||| || |||||||||| |||| ||||||||||||| ||||||| || ||||||||||| |||||||| |
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| T |
13077178 |
agcgccatgcccgattgtttgtacatgagga---agctttttggaagaaaagggctaaaatgcattggttgaaagaaggagatatgaacacaaagttctt |
13077082 |
T |
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| Q |
378 |
tcatatgtcggcaac |
392 |
Q |
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| T |
13077081 |
ccacatgtcggcaac |
13077067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 88 - 388
Target Start/End: Original strand, 18716241 - 18716539
Alignment:
| Q |
88 |
gaagggtagaatgatggtggtgttgtaaaagtgactgatcgggttctacgttgctcatctaagttacataaatg-gggtaagaggaaaaatattcacttt |
186 |
Q |
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||||||| ||||| | ||||||||||| ||||| || |||||||||||| || ||||||| ||||| | || |||||||| || ||||||||| |
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| T |
18716241 |
gaagggtggaatggtagtggtgttgtagaagtgtctaatcgggttctacatttttcatctactttacaacattgagggtaagaaaaagcgaattcacttt |
18716340 |
T |
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| Q |
187 |
caagaggagatccaacagtgcactcgccttcttgaatcaattaggagctcaccaaacggtgtgaattcagttcggtttcgaaaggagattgagcgccatg |
286 |
Q |
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| T |
18716341 |
caagaggagatacaacaatgcatttgcattattgaatcaattaggagctctcctaatggtgtgaatacagctaggttctgcgaagagaatgagcgccatg |
18716440 |
T |
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| Q |
287 |
cccgactgcttgtacaggaggaggaagttttttggaagcaaagacttaaaatgcattggatgaaagatggggatatgaacactaagttctttcatatgtc |
386 |
Q |
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| T |
18716441 |
cccggtttctagttc---aggaggaagctttttggaagcaaagggctaaaatgcattggttgaaagaatgagatatgaacacaaagttcttccacatgtc |
18716537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 382
Target Start/End: Original strand, 14596 - 14692
Alignment:
| Q |
283 |
catgcccgactgcttgtacaggaggaggaagttttttggaagcaaagacttaaaatgcattggatgaaagatggggatatgaacactaagttctttcata |
382 |
Q |
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||||| ||||| |||||||||||||||| | ||||||||||||||| | |||||||| | | |||| || ||||||||||| |||||||||||||||| |
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| T |
14596 |
catgctcgactacttgtacaggaggagg---tcttttggaagcaaagagtgaaaatgcactagttgaaggaaggggatatgaatactaagttctttcata |
14692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 383
Target Start/End: Original strand, 7124459 - 7124556
Alignment:
| Q |
283 |
catgcccgactgcttgtacaggaggaggaagttttttggaagcaaagacttaaaatgcattggatgaaagatggggatatgaacactaagttctttcata |
382 |
Q |
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||||| ||||| ||||||||||||||| | ||||||||||||||| |||||||| ||| |||| || ||||||||||| |||||||||||||||| |
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| T |
7124459 |
catgctcgactacttgtacaggaggag---gcgttttggaagcaaagagcaaaaatgcactggttgaaggaaggggatatgaatactaagttctttcata |
7124555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 382
Target Start/End: Complemental strand, 43320926 - 43320860
Alignment:
| Q |
316 |
ttttggaagcaaagacttaaaatgcattggatgaaagatggggatatgaacactaagttctttcata |
382 |
Q |
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||||||||||||||| | |||||||||||| |||| || |||||||| || |||||||||||||||| |
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| T |
43320926 |
ttttggaagcaaagagtgaaaatgcattggttgaaggaaggggatataaatactaagttctttcata |
43320860 |
T |
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