View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9246_low_27 (Length: 373)
Name: NF9246_low_27
Description: NF9246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9246_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 9 - 358
Target Start/End: Complemental strand, 48594705 - 48594356
Alignment:
| Q |
9 |
agcacagaaacatattgcatatgcaatgagcaagaataagaaacacatgaagtctctcatgggaaaagtgcaaggttttagccttccatctcttggtggt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48594705 |
agcacagaaacatattgcatatgcaatgagcaagaataagaaacacatgaagtctctcatgggaaaagtgcaaggttttagccttccatctcttggtggt |
48594606 |
T |
|
| Q |
109 |
tgctttgacggctgtcgcgaccaagcacaaggctcgggattcgggacgaggatatggaacctgagtgataagccagtggagctgcaaataagggtgggat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48594605 |
tgctttgacggctgtcgcgaccaagcacaaggctcgggattcgggacgaggatatggaacctgagtgataagccagtggagctgcaaataagggtgggat |
48594506 |
T |
|
| Q |
209 |
caatactgaaaaagattcatacattgaagccagggtcttcaaagagactcaaatgtaaaaacatatataaggcgtatatgcctaggaatggcagtgttgg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48594505 |
caatactgaaaaagattcatacattgaagccagggtcttcaaagagactcaaatgtaaaaacatatataaggcatatatgcctaggaatggcagtgttgg |
48594406 |
T |
|
| Q |
309 |
tgaaaatttgaagaacttgttgtattcctatgatgaaactagtcatcctt |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48594405 |
tgaaaatttgaagaacttgttgtattcctatgatgaaactagtcatcctt |
48594356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 59 - 293
Target Start/End: Original strand, 7624666 - 7624900
Alignment:
| Q |
59 |
agtctctcatgggaaaagtgcaaggttttagccttccatctcttggtggttgctttgacggctgtcgcgaccaagcacaaggctcgggattcgggacgag |
158 |
Q |
| |
|
||||||||||||| ||| || |||||| ||||||| ||||||||| ||||||||||| ||| || || | |||| || ||||| ||||| || |
|
|
| T |
7624666 |
agtctctcatggggaaaatgagaggtttgagccttcaatctcttggaggttgctttgatacctgctatgatcagactcaagcctatggattagggacaag |
7624765 |
T |
|
| Q |
159 |
gatatggaacctgagtgataagccagtggagctgcaaataagggtgggatcaatactgaaaaagattcatacattgaagccagggtcttcaaagagactc |
258 |
Q |
| |
|
||| |||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||| |||||| |||||||||||||||||||||||| | |
|
|
| T |
7624766 |
gatttggaacctgagtgataggccagtggagctacaaataagggtaggatcaatactgaagaaggttcatattttgaagccagggtcttcaaagagagtg |
7624865 |
T |
|
| Q |
259 |
aaatgtaaaaacatatataaggcgtatatgcctag |
293 |
Q |
| |
|
||| ||||| |||||||||| | ||||||||||| |
|
|
| T |
7624866 |
aaaagtaaacgcatatataagacatatatgcctag |
7624900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University