View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9246_low_3 (Length: 903)
Name: NF9246_low_3
Description: NF9246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9246_low_3 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Complemental strand, 41735378 - 41734937
Alignment:
| Q |
18 |
acatcttcaaagtgtacttggaaatcatcgaatccccatatgtcatttccttccttataagcgtaaaacaggtcgctagaaaatctactaagaattgtgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41735378 |
acatcttcaaagtgtacttggaaatcatcgaatccccatatgtcatttccttccttataagcgtaaaacaggtcgctagaaaatctactaagaattgtgt |
41735279 |
T |
|
| Q |
118 |
agggttagattgataagaaaatcatgtgttcaactccnnnnnnncaaggatgtgttcaactccattaacaaacatttgtcattaaaataaataaattatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41735278 |
agggttagattgataagaaaatcatgtgttcaactcctttttttcaaggatgtgttcaactccattaacaaacatttgtcattaaaataaataaattatt |
41735179 |
T |
|
| Q |
218 |
gtttggagaccgatttattttgtaagcgtagtttaatgaaatggttgcttataatcttcgctaaggaaaccatatataatgccaaatattatcattttta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41735178 |
gtttggagaccgatttattttgtaagcgtagtttaatgaaatggttgcttataatcttcgctaaggaaaccatatataatgccaaatattatcattttta |
41735079 |
T |
|
| Q |
318 |
tgttggcataccattgatcctttaaatttttaatgaaatgaatttctttgccattatnnnnnnncattgaaagtgatataaaaagggagatatatgacat |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
41735078 |
tgttggcataccattgatcctttaaatttttaatgaaatgaatttctttgccattataaaaatacattgaaagtgatataaaaagggagatatatgacat |
41734979 |
T |
|
| Q |
418 |
cattgtctgcgacgaatttagggaggggcagacgtggatgaa |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41734978 |
cattgtctgcgacgaatttagggaggggcagacgtggatgaa |
41734937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 458 - 903
Target Start/End: Complemental strand, 41734293 - 41733844
Alignment:
| Q |
458 |
aaattatgtttgcaactatccgnnnnnnnnatcattaggtgaattttttggtcgaatttagtctagctataaacaatttacctttttaaaacaaataagt |
557 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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|
| T |
41734293 |
aaattatgtttgcaactatccgtttttt--atcattaggtgaattttttggtcgaatttagtctagttataaacaatttacttttttaaaacaaataagt |
41734196 |
T |
|
| Q |
558 |
gggatgttcgaggttcaaaacctgattcctacatatattatatattatgcaatatccttaccaattaagttaagctcacaaaaac------gtgtgaact |
651 |
Q |
| |
|
||| ||| |||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
41734195 |
ggggtgtccgaggttcaaaacccgattcctatatatattatatattatgcaatatccctaccaattaagttaagctcacaaaaacaaaaacgtgtgaact |
41734096 |
T |
|
| Q |
652 |
acccatttaacgtggcaattgtgtatgtgctacgtacggcccaaatattattaggttaaatctaatttttgttccaataaaattctcaatttgttacgag |
751 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41734095 |
acccatttaacgtggcaattgtgtatgtgctacgtacggcccaaatattattaggttaaatctaatttttgttccaataaaattctcaatttgttacgag |
41733996 |
T |
|
| Q |
752 |
ctcaaaatttaaatttcgttcttaattttttacctagatttagtcctttctaaagtctctaaaaccatccctcatattccaccattctttacactcacta |
851 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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|
| T |
41733995 |
ctcaaaatttaaatttagttcttaattttttacctagatttagtcctttctaaagtctctaaaaccatccctcatattccaccatcctttacactcacca |
41733896 |
T |
|
| Q |
852 |
tcactcgagcatcacaccttcaaccaaccacaagtcactattgtgcatcctt |
903 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41733895 |
tcactcgagtatcacaccttcaaccaaccacaagtcactattgtgcatcctt |
41733844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 596 - 637
Target Start/End: Complemental strand, 3681669 - 3681628
Alignment:
| Q |
596 |
tatatattatgcaatatccttaccaattaagttaagctcaca |
637 |
Q |
| |
|
||||||||||| | ||||||||||||||||| |||||||||| |
|
|
| T |
3681669 |
tatatattatgaattatccttaccaattaagataagctcaca |
3681628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 596 - 638
Target Start/End: Complemental strand, 28581228 - 28581186
Alignment:
| Q |
596 |
tatatattatgcaatatccttaccaattaagttaagctcacaa |
638 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28581228 |
tatataatatgcaatatccctaccaattaagttaagctcacaa |
28581186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 598 - 636
Target Start/End: Complemental strand, 2263749 - 2263711
Alignment:
| Q |
598 |
tatattatgcaatatccttaccaattaagttaagctcac |
636 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
2263749 |
tatattatgcaatgttcttaccaattaagttaagctcac |
2263711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 638
Target Start/End: Original strand, 27651552 - 27651593
Alignment:
| Q |
597 |
atatattatgcaatatccttaccaattaagttaagctcacaa |
638 |
Q |
| |
|
|||||||||||| | |||||||||| |||||||||||||||| |
|
|
| T |
27651552 |
atatattatgcattgtccttaccaactaagttaagctcacaa |
27651593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 597 - 641
Target Start/End: Complemental strand, 9408378 - 9408334
Alignment:
| Q |
597 |
atatattatgcaatatccttaccaattaagttaagctcacaaaaa |
641 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||| |||| |
|
|
| T |
9408378 |
atatattatgcaatatctttaccaattaagttaaactcacgaaaa |
9408334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 589 - 636
Target Start/End: Original strand, 22062427 - 22062474
Alignment:
| Q |
589 |
catatattatatattatgcaatatccttaccaattaagttaagctcac |
636 |
Q |
| |
|
|||||||||||||||||| | | |||||||||||| |||||||||||| |
|
|
| T |
22062427 |
catatattatatattatgtattgtccttaccaattgagttaagctcac |
22062474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 631
Target Start/End: Complemental strand, 22050279 - 22050244
Alignment:
| Q |
596 |
tatatattatgcaatatccttaccaattaagttaag |
631 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22050279 |
tatatattatgcaatatccctaccaattaagttaag |
22050244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 638
Target Start/End: Original strand, 41897575 - 41897616
Alignment:
| Q |
597 |
atatattatgcaatatccttaccaattaagttaagctcacaa |
638 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
41897575 |
atatattatgcaatatccctaccaactaagttaatctcacaa |
41897616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 630
Target Start/End: Complemental strand, 53807463 - 53807430
Alignment:
| Q |
597 |
atatattatgcaatatccttaccaattaagttaa |
630 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
53807463 |
atatattatgcaatatccttatcaattaagttaa |
53807430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 597 - 640
Target Start/End: Complemental strand, 51772931 - 51772888
Alignment:
| Q |
597 |
atatattatgcaatatccttaccaattaagttaagctcacaaaa |
640 |
Q |
| |
|
||||| |||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
51772931 |
atataatatgcaatatccctaccaactaagttaagctcacaaaa |
51772888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 638
Target Start/End: Complemental strand, 552213 - 552172
Alignment:
| Q |
597 |
atatattatgcaatatccttaccaattaagttaagctcacaa |
638 |
Q |
| |
|
|||||||||||||||||| |||||| | |||||||||||||| |
|
|
| T |
552213 |
atatattatgcaatatccctaccaactgagttaagctcacaa |
552172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 634
Target Start/End: Original strand, 7772482 - 7772519
Alignment:
| Q |
597 |
atatattatgcaatatccttaccaattaagttaagctc |
634 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
7772482 |
atatattatgcattatccttaccaattgagttaagctc |
7772519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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