View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9246_low_32 (Length: 262)
Name: NF9246_low_32
Description: NF9246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9246_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 2107920 - 2108178
Alignment:
| Q |
1 |
tgtgataatcactatgaatgaaggtgatagatgttatttatgaccccaaaaagaagcttcattttgatacattatattcttcaatcttcctaggattttt |
100 |
Q |
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| T |
2107920 |
tgtgataatcactatgaatgaaggtgatagatgttatttatgaccccaaaaagaagcttcattttgatacattatattcttcaatcttcctagtattttt |
2108019 |
T |
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| Q |
101 |
actaaaaatttaagggatttgtagaacataaaatgcaatttgtctaaagaagtattaggaaacttgattttgaaaactttcaactgtagagtgtttgtcg |
200 |
Q |
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| T |
2108020 |
actaaaaatgtaagggatttgtagaacatacaatgcaatttgtctaaagaagtattaggaaacttgattttgaaaactttcaactgtagagtgtttgtca |
2108119 |
T |
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| Q |
201 |
gatggctttgtagttttgttcttcttctgttcattcatatattattgaactccaaactc |
259 |
Q |
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| T |
2108120 |
gatggctttgtatttttgttcttcttctgttcattcatatattattgaacttcaaactc |
2108178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 2099751 - 2099913
Alignment:
| Q |
1 |
tgtgataatcactatgaatgaaggtgatagatgttatttatgaccccaaaaagaagcttcattttgatacattatattcttcaatcttcctaggattttt |
100 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
2099751 |
tgtgataatcactatgaatg---gtgatagatgttat----gaccccaaaaagaagcttcattttgatacattatattcttc-------ctaatattttt |
2099836 |
T |
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| Q |
101 |
actaaaaatttaagggatttgtagaacataaaatgcaatttgtctaaagaagtattaggaaacttgattttgaaaac |
177 |
Q |
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| T |
2099837 |
actaaaattttagggaattagtagaacatagaatacaatttgtctaaagaagtattaggaaacttgattttgaaaac |
2099913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 2089513 - 2089556
Alignment:
| Q |
154 |
attaggaaacttgattttgaaaactttcaactgtagagtgtttg |
197 |
Q |
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| T |
2089513 |
attaggaaacttgattttgaaaactttctactgtggagtgtttg |
2089556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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