View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9246_low_33 (Length: 248)
Name: NF9246_low_33
Description: NF9246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9246_low_33 |
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| [»] scaffold0311 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0130 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 34764100 - 34763972
Alignment:
| Q |
8 |
cgtgtttttcaattgagagaaaatttgaaaacaaaaagcaaaataacttttggcagtttccgtttttcaatttttaaaacaataaaattggaacagtctt |
107 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
34764100 |
cgtgtttttcagttgagagaaaacttgaaaacaaaaagcaaaacaacttttggcagtttccgtttttcagtttttaaaacaataaaattggaacagtttt |
34764001 |
T |
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| Q |
108 |
taaaaactaattttaagaagaccttcatc |
136 |
Q |
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|||||||||||||| |||||||||||||| |
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| T |
34764000 |
taaaaactaattttgagaagaccttcatc |
34763972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 36955641 - 36955718
Alignment:
| Q |
27 |
aaaatttgaaaacaaaaagcaaaataacttttggcagtttccgtttttcaatttttaaaacaataaaattggaacagt |
104 |
Q |
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|||| |||||||||||| |||| | ||||||||||||| | | ||||| ||||||||| ||||||| ||||||||| |
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| T |
36955641 |
aaaacttgaaaacaaaagctaaaacagcttttggcagttttcatatttcagtttttaaaataataaaactggaacagt |
36955718 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 53881303 - 53881175
Alignment:
| Q |
8 |
cgtgtttttcaattgagagaaaatttgaaaacaaaaagcaaaataacttttggcagtttccgtttttcaatttttaaaacaataaaattggaacagtctt |
107 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
53881303 |
cgtgtttttcagttgagagaaaacttgaaaacaaaaagcaaaacaacttttggcagtttccgtttttcagtttttaaaacaataaaattggaacagtttt |
53881204 |
T |
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| Q |
108 |
taaaaactaattttaagaagaccttcatc |
136 |
Q |
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|||||||||||||| |||||||||||||| |
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| T |
53881203 |
taaaaactaattttgagaagaccttcatc |
53881175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0311 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0311
Description:
Target: scaffold0311; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 9352 - 9224
Alignment:
| Q |
8 |
cgtgtttttcaattgagagaaaatttgaaaacaaaaagcaaaataacttttggcagtttccgtttttcaatttttaaaacaataaaattggaacagtctt |
107 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| | || |
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| T |
9352 |
cgtgtttttcagttgagagaaaacttgaaaacaaaaagcaaaacaacttttggcagtttccgtttttcagtttttaaaacaataaaattggaacattttt |
9253 |
T |
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| Q |
108 |
taaaaactaattttaagaagaccttcatc |
136 |
Q |
| |
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|||||||||||||| |||||||||||||| |
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| T |
9252 |
taaaaactaattttgagaagaccttcatc |
9224 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 33368209 - 33368078
Alignment:
| Q |
5 |
tttcgtgtttttcaattgagagaaaatttgaaaacaaaaagcaaaataacttttggcagtttccgtttttcaatttttaaaacaataaaattggaacagt |
104 |
Q |
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|||| ||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
33368209 |
tttcttgtttttcagttgagagaaaacttgaaaacaaaaagcaaaacaacttttggcagttttcgtttttcagtttttaaaacaataaaattggaacagt |
33368110 |
T |
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| Q |
105 |
ctttaaaaactaattttaagaagaccttcatc |
136 |
Q |
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|||||||||||||||| |||||||||||||| |
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| T |
33368109 |
ttttaaaaactaattttgagaagaccttcatc |
33368078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 11741375 - 11741247
Alignment:
| Q |
8 |
cgtgtttttcaattgagagaaaatttgaaaacaaaaagcaaaataacttttggcagtttccgtttttcaatttttaaaacaataaaattggaacagtctt |
107 |
Q |
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|
||||||||||| ||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||| || |
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| T |
11741375 |
cgtgtttttcagttgagagaaaacttgaaaataaaaagcaaaacaacttttggcagtttccgtttttcagtttttaaaacaataaaattgaaacagattt |
11741276 |
T |
|
| Q |
108 |
taaaaactaattttaagaagaccttcatc |
136 |
Q |
| |
|
|||||| |||| || |||||||||||||| |
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|
| T |
11741275 |
taaaaattaatattgagaagaccttcatc |
11741247 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 13021000 - 13021107
Alignment:
| Q |
8 |
cgtgtttttcaattgagagaaaatttgaaaacaaaaagcaaaataacttttggcagtttccgtttttcaatttttaaaacaataaaattggaacagtctt |
107 |
Q |
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|||||||| || ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
13021000 |
cgtgttttgcagttgagagaaaacttgaaaacaaaaagcaaaacaacttttggcagtttccgtttttcagtttttaaaacaataaaattggaacagtttt |
13021099 |
T |
|
| Q |
108 |
taaaaact |
115 |
Q |
| |
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|||||||| |
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| T |
13021100 |
taaaaact |
13021107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 32412015 - 32412055
Alignment:
| Q |
208 |
atatattcttctcatttggtcaatggattctatttctaata |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
32412015 |
atatattcttctcatttggtcaatggattctatttctaata |
32412055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 24978 - 25062
Alignment:
| Q |
20 |
ttgagagaaaatttgaaaacaaaaagcaaaataacttttggcagtttccgtttttcaatttttaaaacaataaaattggaacagt |
104 |
Q |
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|
|||||| |||| || |||||||||| |||| | |||| |||||||| | | ||||| |||||||||||| ||||| |||||||| |
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| T |
24978 |
ttgagaaaaaacttaaaaacaaaaactaaaacatctttaggcagttttcatatttcagtttttaaaacaagaaaatcggaacagt |
25062 |
T |
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