View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9246_low_40 (Length: 238)
Name: NF9246_low_40
Description: NF9246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9246_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 50055931 - 50056139
Alignment:
| Q |
17 |
tttcccctgtctcggtgttcttgccttcttggtgaagccagagaaaggaccacaattgaagaattcatcaccattaatggacttgtacgaagctgttttc |
116 |
Q |
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| T |
50055931 |
tttcccctgtctcggtgttcttgccttcttggtgaagccagagaaaggaccacaattgaagaattcatcaccattaatggacttgtacgaagctgttttc |
50056030 |
T |
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| Q |
117 |
aaacgaactctttcatgtcttcgagctaaagaattagctgaatgaacagaagagtcacaagcttgacagagaaaagcatcatcggcagcacaataccaac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
50056031 |
aaacgaactctttcatgtcttcgagctaaagaattagctgaatgaacagaagagtcacaagcttgacagagaaaagcatcatcagcagcacaataccaac |
50056130 |
T |
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| Q |
217 |
gtgctctct |
225 |
Q |
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||||||||| |
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| T |
50056131 |
gtgctctct |
50056139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 43867918 - 43867865
Alignment:
| Q |
170 |
gtcacaagcttgacagagaaaagcatcatcggcagcacaataccaacgtgctct |
223 |
Q |
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||||||| | ||||| || ||||||||||| ||||||||| ||||||||||||| |
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| T |
43867918 |
gtcacaaccatgacaaaggaaagcatcatctgcagcacaaaaccaacgtgctct |
43867865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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