View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9246_low_42 (Length: 234)

Name: NF9246_low_42

Description: NF9246

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9246_low_42

[»] chr7 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 174; E-Value: 9e-94

Query Start/End: Original strand, 17 - 206

Target Start/End: Complemental strand, 12020139 - 12019950

Alignment:

Q	17	catgttcatttctccactaggtgtcataatgctttatctttcctggtagtttcttatttagttgttcttggcctttccttgcctataacaattaaattat	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	12020139	catgttcatttctccactaggtgtcataatgctttatctttcctggtagtttcttatttagttgttcttggcctttctttgcctataacaattaaattat	12020040	T

Q	117	cctcaatcatctgcaatttatatagtaagtacaaatcagttggtagctgcaagaacatttgatatgttgagacacatattcgaactcggg	206	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	12020039	cctcaatcatctgcaatttatatagtaagtacaaatcagttggtagctgcaataacatttgatatgttgcgacacatattcaaactcggg	12019950	T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 130 - 199

Target Start/End: Complemental strand, 13172207 - 13172138

Alignment:

Q	130	caatttatatagtaagtacaaatcagttggtagctgcaagaacatttgatatgttgagacacatattcga	199	Q
		\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\| \|\| \|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13172207	caatttatctcgtaagtacaactctcttgatagttgcatagacatttgatatgttgagacacatattcga	13172138	T

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