View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9246_low_6 (Length: 621)

Name: NF9246_low_6
Description: NF9246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9246_low_6
NF9246_low_6
[»] chr8 (8 HSPs)
chr8 (155-552)||(31030084-31030482)
chr8 (19-102)||(31028315-31028397)
chr8 (446-532)||(3810705-3810792)
chr8 (428-521)||(19711888-19711980)
chr8 (446-508)||(33473858-33473921)
chr8 (558-617)||(31031356-31031415)
chr8 (446-510)||(40041264-40041328)
chr8 (473-533)||(44344703-44344763)
[»] chr7 (5 HSPs)
chr7 (428-533)||(42148730-42148835)
chr7 (461-532)||(19365550-19365621)
chr7 (461-532)||(26502585-26502656)
chr7 (461-532)||(26590058-26590129)
chr7 (463-509)||(47523217-47523263)
[»] chr3 (8 HSPs)
chr3 (446-549)||(54718329-54718432)
chr3 (436-511)||(32319337-32319413)
chr3 (462-512)||(29750904-29750954)
chr3 (461-521)||(35585364-35585424)
chr3 (428-527)||(11433667-11433765)
chr3 (461-532)||(33461243-33461314)
chr3 (461-532)||(33573597-33573668)
chr3 (462-532)||(33342821-33342891)
[»] chr4 (4 HSPs)
chr4 (428-549)||(54734621-54734742)
chr4 (436-510)||(14272948-14273022)
chr4 (456-549)||(44253880-44253973)
chr4 (436-532)||(44255703-44255799)
[»] chr2 (4 HSPs)
chr2 (447-521)||(40606891-40606965)
chr2 (446-550)||(5188859-5188963)
chr2 (455-546)||(24127945-24128036)
chr2 (461-512)||(32035176-32035227)
[»] chr1 (5 HSPs)
chr1 (446-521)||(32055173-32055248)
chr1 (446-504)||(40371707-40371766)
chr1 (471-533)||(14099558-14099620)
chr1 (446-532)||(12259152-12259236)
chr1 (467-528)||(33365209-33365271)
[»] scaffold0057 (1 HSPs)
scaffold0057 (456-514)||(39509-39567)
[»] scaffold1414 (1 HSPs)
scaffold1414 (461-509)||(971-1019)
[»] chr5 (2 HSPs)
chr5 (436-511)||(5125270-5125346)
chr5 (441-485)||(13678709-13678753)


Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 155 - 552
Target Start/End: Original strand, 31030084 - 31030482
Alignment:
Q  155 aatatttccaccagctaatcttagtgaaaacacatttcaaga-taaatgcatgcaagtcttggtttatctaaaacacaaaacatag-----gaggaacta 248  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||     |||||||||    
T  31030084 aatatttccaccagctaatcttagtgaaaacacatttcaagaataaatgcatgcaagtcttggtttgtctaaaacacaaaacataggataggaggaacta 31030183  T
Q  249 aatcaaatggatttttatttatgttctcaaccatatggagaaacgattattgtaaaatcaaaatctagttgcaagagtcgatgccggtaaaagnnnnnnn 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||           
T  31030184 aatcaaatggatttttatttatgttctcaaccatatggagaaacgattatggtaaaatcaaaatctagttgcaagagtcgatgccggtaaaagaaaaaaa 31030283  T
Q  349 tcaaatcaaatggattttaggaaagaagagttccggtaatggtaatggaaatgctcactgttgggaatgtttccacaagaaggtggaggtgaacaaatga 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||      ||||||||||||||||    
T  31030284 tcaaatcaaatggattttaggaaagaagagttccggtaatggtaatggaaatgctcaccgttgggaatgtttccacaa------ggaggtgaacaaatga 31030377  T
Q  449 aagagtgattgagttttattttatataaagggtaaatttggtac-tttatgtcaaatgttggggtgagggtatatatgtatgggtacatggtataacttc 547  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  31030378 aagagtgattgagttttattttatataaaaggtaaatttggtacttttatgtcaaatgttggggtgagggtatatatgtaggggtacaaggtataacttc 31030477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 31028315 - 31028397
Alignment:
Q  19 atagcaacctagaagatcctcttattttttatagaccataagacacacacaatagctaaccaaaagaggatgttgaaattctta 102  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31028315 atagaaacctagaagatcctcttattttttatagaccataagacacacacaatagct-accaaaagaggatgttgaaattctta 31028397  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 446 - 532
Target Start/End: Complemental strand, 3810792 - 3810705
Alignment:
Q  446 tgaaagagtgattgagttttattttatataaa-gggtaaatttggtactttatgtcaaatgttggggtgagggtatatatgtatgggt 532  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| | |||||| ||||| ||||    
T  3810792 tgaaagagtgattgagttttattttatataaaagggtaaatttggtactttgtgtcaaatgttggggtcaaggtataaatgtaggggt 3810705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 428 - 521
Target Start/End: Original strand, 19711888 - 19711980
Alignment:
Q  428 aaggtggaggtgaacaaatgaaagagtgattgagttttattttatataaagggtaaatttggtactttatgtcaaatgttggggtgagggtata 521  Q
    ||||||| |||||| || |||||| ||||||| | ||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  19711888 aaggtggcggtgaa-aagtgaaagggtgattgtggtttgttttatataaagggtaaatttggtagtttatgtcaaatgttggggtgaaggtata 19711980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 446 - 508
Target Start/End: Original strand, 33473858 - 33473921
Alignment:
Q  446 tgaaagagtgattgagttttattttatat-aaagggtaaatttggtactttatgtcaaatgttg 508  Q
    |||||||||||||||||||| |||||||| ||| |||||||||||||| || ||||||||||||    
T  33473858 tgaaagagtgattgagttttcttttatataaaaaggtaaatttggtacattgtgtcaaatgttg 33473921  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 558 - 617
Target Start/End: Original strand, 31031356 - 31031415
Alignment:
Q  558 ttatatgacattctatcgcaatgaccaagcctctctgacgtcatcacaggttctgctcgt 617  Q
    ||||| ||||||| |||||||||||||||||||||| |||| ||||   |||||||||||    
T  31031356 ttatacgacattccatcgcaatgaccaagcctctctaacgtgatcaatagttctgctcgt 31031415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 446 - 510
Target Start/End: Original strand, 40041264 - 40041328
Alignment:
Q  446 tgaaagagtgattgagttttattttatataaagggtaaatttggtactttatgtcaaatgttggg 510  Q
    |||| ||||||||| ||||| ||||||  |||| |||||||||||| ||| ||| ||||||||||    
T  40041264 tgaacgagtgattgtgttttgttttatgcaaagagtaaatttggtagtttgtgttaaatgttggg 40041328  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 473 - 533
Target Start/End: Original strand, 44344703 - 44344763
Alignment:
Q  473 ataaagggtaaatttggtactttatgtcaaatgttggggtgagggtatatatgtatgggta 533  Q
    ||||| |||||| |||||| ||| | | ||||||||||||||||||||| ||||| |||||    
T  44344703 ataaatggtaaaattggtagtttttttaaaatgttggggtgagggtataaatgtaggggta 44344763  T

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Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 428 - 533
Target Start/End: Complemental strand, 42148835 - 42148730
Alignment:
Q  428 aaggtggaggtgaacaaatgaaagagtgattgagttttattttatataaagggtaaatttggtactttatgtcaaatgttggggtgagggtatatatgta 527  Q
    ||||||| |||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |  ||||| |||||    
T  42148835 aaggtgggggtgaataagtgaaagagtgattaagttttattttatataaagggtaaatttggtactttgtgtcaaatgttggggtcaacgtataaatgta 42148736  T
Q  528 tgggta 533  Q
     |||||    
T  42148735 ggggta 42148730  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 461 - 532
Target Start/End: Complemental strand, 19365621 - 19365550
Alignment:
Q  461 gttttattttatataaagggtaaatttggtactttatgtcaaatgttggggtgagggtatatatgtatgggt 532  Q
    ||||| ||||||||||||||||| ||||||| ||||||| |||||||||||| | |||||| ||||| ||||    
T  19365621 gttttgttttatataaagggtaattttggtattttatgttaaatgttggggtaaaggtataaatgtaggggt 19365550  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 532
Target Start/End: Complemental strand, 26502656 - 26502585
Alignment:
Q  461 gttttattttatataaagggtaaatttggtactttatgtcaaatgttggggtgagggtatatatgtatgggt 532  Q
    ||||| ||||||| | |||||||||| |||| ||| |||||||||||||||| | |||||| ||||| ||||    
T  26502656 gttttgttttataaagagggtaaattgggtagtttgtgtcaaatgttggggtaaaggtataaatgtaggggt 26502585  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 532
Target Start/End: Original strand, 26590058 - 26590129
Alignment:
Q  461 gttttattttatataaagggtaaatttggtactttatgtcaaatgttggggtgagggtatatatgtatgggt 532  Q
    ||||| ||||||| | |||||||||| |||| ||| |||||||||||||||| | |||||| ||||| ||||    
T  26590058 gttttgttttataaagagggtaaattgggtagtttgtgtcaaatgttggggtaaaggtataaatgtaggggt 26590129  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 463 - 509
Target Start/End: Complemental strand, 47523263 - 47523217
Alignment:
Q  463 tttattttatataaagggtaaatttggtactttatgtcaaatgttgg 509  Q
    |||||||||||||||||||||||||| || ||| |||| ||||||||    
T  47523263 tttattttatataaagggtaaatttgatagtttgtgtctaatgttgg 47523217  T

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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 446 - 549
Target Start/End: Complemental strand, 54718432 - 54718329
Alignment:
Q  446 tgaaagagtgattgagttttattttatataaagggtaaatttggtactttatgtcaaatgttggggtgagggtatatatgtatgggtacatggtataact 545  Q
    ||||||| ||||||| ||||||||||||||||| |||||||||| ||||||||| |||||||||||| | |||||| ||||| ||||    |||||||||    
T  54718432 tgaaagaatgattgaattttattttatataaagagtaaatttggaactttatgttaaatgttggggtcaaggtataaatgtaggggtgtggggtataact 54718333  T
Q  546 tcct 549  Q
    ||||    
T  54718332 tcct 54718329  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 436 - 511
Target Start/End: Complemental strand, 32319413 - 32319337
Alignment:
Q  436 ggtgaacaaatgaaagagtga-ttgagttttattttatataaagggtaaatttggtactttatgtcaaatgttgggg 511  Q
    ||||||||| |||||| |||| ||| ||||||||||||||||||| ||||||||||| ||| ||| |||||||||||    
T  32319413 ggtgaacaagtgaaagggtgaattgtgttttattttatataaaggataaatttggtagtttgtgtaaaatgttgggg 32319337  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 462 - 512
Target Start/End: Original strand, 29750904 - 29750954
Alignment:
Q  462 ttttattttatataaagggtaaatttggtactttatgtcaaatgttggggt 512  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  29750904 ttttattttatataaaggataaatttagtactttatatcaaatgttggggt 29750954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 461 - 521
Target Start/End: Original strand, 35585364 - 35585424
Alignment:
Q  461 gttttattttatataaagggtaaatttggtactttatgtcaaatgttggggtgagggtata 521  Q
    |||||||||| ||||||||||||| |||||| ||| | | |||||||||||||| ||||||    
T  35585364 gttttattttttataaagggtaaaattggtagtttgtttaaaatgttggggtgaaggtata 35585424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 527
Target Start/End: Original strand, 11433667 - 11433765
Alignment:
Q  428 aaggtggaggtgaacaaatgaaagagtgattgagttttattttatataaagggtaaatttggtactttatgtcaaatgttggggtgagggtatatatgta 527  Q
    ||||||| |||||| || |||| | ||||||| ||||| ||||||  |||||||||||||| || ||| ||| ||||||||||||||  ||||| |||||    
T  11433667 aaggtgggggtgaa-aagtgaatgggtgattgtgttttgttttatgcaaagggtaaatttgatagtttgtgttaaatgttggggtgaaagtataaatgta 11433765  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 532
Target Start/End: Complemental strand, 33461314 - 33461243
Alignment:
Q  461 gttttattttatataaagggtaaatttggtactttatgtcaaatgttggggtgagggtatatatgtatgggt 532  Q
    ||||| ||||||||| |||||||||| | || ||| |||||||||||||||| | |||||| ||||| ||||    
T  33461314 gttttgttttatatagagggtaaattggatagtttgtgtcaaatgttggggtaaaggtataaatgtaggggt 33461243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 532
Target Start/End: Complemental strand, 33573668 - 33573597
Alignment:
Q  461 gttttattttatataaagggtaaatttggtactttatgtcaaatgttggggtgagggtatatatgtatgggt 532  Q
    ||||| ||||||||||||||||| ||| ||| ||| ||| |||||||||||| | |||||| ||||| ||||    
T  33573668 gttttgttttatataaagggtaatttttgtagtttgtgttaaatgttggggtaaaggtataaatgtaggggt 33573597  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 462 - 532
Target Start/End: Original strand, 33342821 - 33342891
Alignment:
Q  462 ttttattttatataaagggtaaatttggtactttatgtcaaatgttggggtgagggtatatatgtatgggt 532  Q
    ||||||| ||||| | ||||||| | ||||||||  || |||||||||| |||||||||||||||| ||||    
T  33342821 ttttattatatatgaggggtaaaatgggtactttgagtaaaatgttgggatgagggtatatatgtaagggt 33342891  T

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Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 428 - 549
Target Start/End: Complemental strand, 54734742 - 54734621
Alignment:
Q  428 aaggtggaggtgaacaaatgaaagagtgattgagttttatttt-atataaagggtaaatttggtactttatgtcaaatgttggggtgagggtatatatgt 526  Q
    ||||||| ||||||||| |||| | ||||||| |||||||||| ||||||||||||||||||||| ||| |||| |||||| |||||| ||||||  |||    
T  54734742 aaggtgggggtgaacaagtgaatg-gtgattgtgttttatttttatataaagggtaaatttggtagtttgtgtctaatgttagggtgaaggtataattgt 54734644  T
Q  527 atgggtacatggtataacttcct 549  Q
    | |||||   |||||||||||||    
T  54734643 aggggtatggggtataacttcct 54734621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 436 - 510
Target Start/End: Complemental strand, 14273022 - 14272948
Alignment:
Q  436 ggtgaacaaatgaaagagtgattgagttttattttatataaagggtaaatttggtactttatgtcaaatgttggg 510  Q
    ||||||||| ||||| ||| | ||||||||||||||||||||||||||||| |||| |||  || ||||||||||    
T  14273022 ggtgaacaagtgaaaaagtaactgagttttattttatataaagggtaaattaggtagtttgagtgaaatgttggg 14272948  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 456 - 549
Target Start/End: Complemental strand, 44253973 - 44253880
Alignment:
Q  456 attgagttttattttatataaagggtaaatttggtactttatgtcaaatgttggggtgagggtatatatgtatgggtacatggtataacttcct 549  Q
    |||| |||||||||||||||||||||||| ||   ||||| ||| |||||||||||||| |||||| || |||||||    |||||||||||||    
T  44253973 attgtgttttattttatataaagggtaaaattaaaactttgtgttaaatgttggggtgaaggtataaatatatgggtgtggggtataacttcct 44253880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 532
Target Start/End: Original strand, 44255703 - 44255799
Alignment:
Q  436 ggtgaacaaatgaaagagtgattgagttttattttatataaagggtaaatttggtactttatgtcaaatgttggggtgagggtatatatgtatgggt 532  Q
    ||||||||| ||||||||| ||||  ||||||||||||||||||| ||| |||| ||||| ||| |||| ||| ||||| | |||| ||||| ||||    
T  44255703 ggtgaacaagtgaaagagttattgtattttattttatataaagggcaaaattggaactttgtgttaaatattgaggtgaagatataaatgtaggggt 44255799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 447 - 521
Target Start/End: Original strand, 40606891 - 40606965
Alignment:
Q  447 gaaagagtgattgagttttattttatataaagggtaaatttggtactttatgtcaaatgttggggtgagggtata 521  Q
    ||||| ||||||| || || ||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||    
T  40606891 gaaagggtgattgtgtattgttttatataaagggtaaatttggtagtttgtgtcaaatgttggggtgaaggtata 40606965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 446 - 550
Target Start/End: Original strand, 5188859 - 5188963
Alignment:
Q  446 tgaaagagtgattgagttttattttatataaagggtaaatttggtactttatgtcaaatgttggggtgagggtatatatgtatgggtacatggtataact 545  Q
    ||||||||||||||| ||||||||||| ||||||||| | || | ||||||||| ||| |||||||| | | |||| ||||| ||||    |||||||||    
T  5188859 tgaaagagtgattgaattttattttatgtaaagggtataattcgaactttatgttaaaggttggggtcaagatataaatgtaggggtgtggggtataact 5188958  T
Q  546 tcctc 550  Q
    |||||    
T  5188959 tcctc 5188963  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 455 - 546
Target Start/End: Complemental strand, 24128036 - 24127945
Alignment:
Q  455 gattgagttttattttatataaagggtaaatttggtactttatgtcaaatgttggggtgagggtatatatgtatgggtacatggtataactt 546  Q
    ||||| ||||| ||||||||||| | ||||||||| | ||| ||| |||||||||||||| |||||| ||||| |||||   ||||||||||    
T  24128036 gattgtgttttgttttatataaaagataaatttggaagtttgtgtaaaatgttggggtgaaggtataaatgtaggggtatggggtataactt 24127945  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 461 - 512
Target Start/End: Original strand, 32035176 - 32035227
Alignment:
Q  461 gttttattttatataaagggtaaatttggtactttatgtcaaatgttggggt 512  Q
    |||| |||||||||||||||||||||||||| || |||| ||||||||||||    
T  32035176 gtttaattttatataaagggtaaatttggtagttcatgtaaaatgttggggt 32035227  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 446 - 521
Target Start/End: Original strand, 32055173 - 32055248
Alignment:
Q  446 tgaaagagtgattgagttttattttatataaagggtaaatttggtactttatgtcaaatgttggggtgagggtata 521  Q
    ||||||||||||||||| |||||||||||||||||||||||||  ||||| ||| ||||||| |||| | ||||||    
T  32055173 tgaaagagtgattgagtattattttatataaagggtaaatttgaaactttgtgttaaatgttagggtcaaggtata 32055248  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 446 - 504
Target Start/End: Original strand, 40371707 - 40371766
Alignment:
Q  446 tgaaagagtgattgagttttattttatat-aaagggtaaatttggtactttatgtcaaat 504  Q
    ||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||    
T  40371707 tgaaagagtgattgagttttattttatgtaaaagggtaaatttgatactttatgtcaaat 40371766  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 471 - 533
Target Start/End: Original strand, 14099558 - 14099620
Alignment:
Q  471 atataaagggtaaatttggtactttatgtcaaatgttggggtgagggtatatatgtatgggta 533  Q
    ||||||||||||||||||||| ||||| ||||| |||||||||| |||||| ||||| |||||    
T  14099558 atataaagggtaaatttggtagtttatttcaaaagttggggtgaaggtataaatgtaggggta 14099620  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 532
Target Start/End: Original strand, 12259152 - 12259236
Alignment:
Q  446 tgaaagagtgattgagttttattttatataaagggtaaatttggtactttatgtcaaatgttggggtgagggtatatatgtatgggt 532  Q
    |||||||||||  ||||||||||||  || |||| |||||||| || |||||||||||| ||||||| | |||||| ||||| ||||    
T  12259152 tgaaagagtga--gagttttattttgaattaaggataaatttgatagtttatgtcaaatattggggtcaaggtataaatgtaggggt 12259236  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 467 - 528
Target Start/End: Original strand, 33365209 - 33365271
Alignment:
Q  467 ttttatataaagggtaaatttggtactttatgtcaaatgtt-ggggtgagggtatatatgtat 528  Q
    ||||||| |||||||||||||| || ||||| ||||||||| ||||||| |||||||| ||||    
T  33365209 ttttatacaaagggtaaatttgatagtttatatcaaatgttgggggtgaaggtatataagtat 33365271  T

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Target: scaffold0057 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 456 - 514
Target Start/End: Original strand, 39509 - 39567
Alignment:
Q  456 attgagttttattttatataaagggtaaatttggtactttatgtcaaatgttggggtga 514  Q
    |||| ||||| ||||||||||||| ||||||||||| ||| ||||||||||||||||||    
T  39509 attgtgttttgttttatataaaggataaatttggtagtttgtgtcaaatgttggggtga 39567  T

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Target: scaffold1414 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1414
Description:

Target: scaffold1414; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 461 - 509
Target Start/End: Complemental strand, 1019 - 971
Alignment:
Q  461 gttttattttatataaagggtaaatttggtactttatgtcaaatgttgg 509  Q
    |||||||||||||| |||||||||||||||| ||||| | |||||||||    
T  1019 gttttattttatatgaagggtaaatttggtagtttatataaaatgttgg 971  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 511
Target Start/End: Complemental strand, 5125346 - 5125270
Alignment:
Q  436 ggtgaacaaatgaaagagtga-ttgagttttattttatataaagggtaaatttggtactttatgtcaaatgttgggg 511  Q
    ||||||||| |||||| || | ||| ||||||||||||| |||||||||||||| || ||| | | |||||||||||    
T  5125346 ggtgaacaagtgaaagggtaaattgtgttttattttataaaaagggtaaatttgatagtttgtataaaatgttgggg 5125270  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 441 - 485
Target Start/End: Original strand, 13678709 - 13678753
Alignment:
Q  441 acaaatgaaagagtgattgagttttattttatataaagggtaaat 485  Q
    |||| ||||| ||| | ||||||||||||||||||||||||||||    
T  13678709 acaagtgaaaaagtaactgagttttattttatataaagggtaaat 13678753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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