View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9246_low_9 (Length: 584)

Name: NF9246_low_9
Description: NF9246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9246_low_9
NF9246_low_9
[»] chr6 (17 HSPs)
chr6 (11-569)||(7041157-7041715)
chr6 (11-259)||(9170782-9171045)
chr6 (92-259)||(7025721-7025894)
chr6 (89-259)||(7012785-7012961)
chr6 (11-259)||(9159383-9159646)
chr6 (106-192)||(7029851-7029937)
chr6 (114-252)||(7046817-7046955)
chr6 (300-496)||(7046555-7046757)
chr6 (300-385)||(7025580-7025665)
chr6 (300-412)||(7012617-7012729)
chr6 (300-434)||(9159678-9159813)
chr6 (300-434)||(9170615-9170750)
chr6 (18-87)||(7029980-7030049)
chr6 (446-496)||(7039748-7039798)
chr6 (300-385)||(213258-213343)
chr6 (37-85)||(7025925-7025973)
chr6 (11-87)||(7012987-7013063)
[»] chr3 (36 HSPs)
chr3 (127-259)||(9494821-9494953)
chr3 (106-257)||(9695608-9695759)
chr3 (108-252)||(9343823-9343967)
chr3 (132-259)||(41985599-41985726)
chr3 (132-249)||(9655375-9655492)
chr3 (108-231)||(9448313-9448436)
chr3 (132-249)||(9646382-9646499)
chr3 (132-259)||(9617481-9617608)
chr3 (149-259)||(9407337-9407447)
chr3 (105-257)||(9336513-9336665)
chr3 (149-259)||(9425544-9425654)
chr3 (105-257)||(9329809-9329961)
chr3 (114-252)||(9485969-9486107)
chr3 (122-259)||(9352872-9353009)
chr3 (106-191)||(9395298-9395383)
chr3 (114-259)||(41980825-41980970)
chr3 (152-259)||(9397756-9397863)
chr3 (132-259)||(9626498-9626625)
chr3 (113-161)||(9613916-9613964)
chr3 (132-222)||(9340679-9340769)
chr3 (335-385)||(9432720-9432770)
chr3 (122-259)||(9377057-9377194)
chr3 (309-385)||(9343678-9343754)
chr3 (106-229)||(9756381-9756504)
chr3 (338-384)||(9329670-9329716)
chr3 (200-262)||(16011768-16011830)
chr3 (132-259)||(9347958-9348085)
chr3 (113-161)||(9348095-9348143)
chr3 (132-259)||(9369612-9369739)
chr3 (149-189)||(9416614-9416654)
chr3 (149-189)||(9441816-9441856)
chr3 (308-375)||(9617668-9617735)
chr3 (114-197)||(13864237-13864320)
chr3 (113-161)||(9340779-9340827)
chr3 (113-161)||(9369749-9369797)
chr3 (106-174)||(16011695-16011763)
[»] chr2 (2 HSPs)
chr2 (127-259)||(20694314-20694446)
chr2 (308-385)||(20694483-20694560)
[»] chr1 (10 HSPs)
chr1 (120-248)||(235195-235323)
chr1 (110-252)||(8814358-8814500)
chr1 (106-256)||(246841-246991)
chr1 (164-259)||(4439831-4439926)
chr1 (106-256)||(231549-231705)
chr1 (120-252)||(251400-251532)
chr1 (167-259)||(18991175-18991267)
chr1 (120-259)||(4428602-4428741)
chr1 (300-384)||(8814548-8814632)
chr1 (300-385)||(4439690-4439775)
[»] chr5 (3 HSPs)
chr5 (105-260)||(33541622-33541777)
chr5 (107-252)||(18571086-18571234)
chr5 (38-87)||(33541810-33541859)
[»] chr7 (3 HSPs)
chr7 (122-261)||(3695659-3695797)
chr7 (105-222)||(450102-450219)
chr7 (342-373)||(3695539-3695570)
[»] chr8 (1 HSPs)
chr8 (114-258)||(44688785-44688929)


Alignment Details
Target: chr6 (Bit Score: 481; Significance: 0; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 11 - 569
Target Start/End: Complemental strand, 7041715 - 7041157
Alignment:
Q  11 gaacctgtggttggtcgtggaaacaagaaattcttagcggaaagcaagggagatttgttgttagcggatgtttatgaccctgatcttaacgattctgtaa 110  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7041715 gaacctttggttggtcgtggaaacaagaaattcttagcggaaagcaagggagatttgttgttagcggatgtttatgaccctgatcttaacgattctgtat 7041616  T
Q  111 ggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctc 210  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7041615 ggattgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctc 7041516  T
Q  211 tgcttctgcttcggatttgtgcgttgccaaagggaattgtgtcatcttttgttataatatcatctgttcatctaaatctgaaagttgtattttggacttg 310  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7041515 tgtttctgcttcggatttgtgcgttgccaaagggaattgtgtcatctttagttatagtatcatctgttcatctaaatctgaaagttgtattttggacttg 7041416  T
Q  311 gatcagggtcggcattcgcctctatctgattatcctgaatattccaacttgttctggccacctccaaagtggatctgagttcgttatcaagtatgttatc 410  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7041415 gatcaaggtcggcattcgcctctatctgattatcctgaatattccaacttgttctggccacctccaaagtggatctgatttcgttatcaagtatgttatc 7041316  T
Q  411 ttccagcgaaaagtttctaatgtgattgtgatacaagctttattgtgattaatttagtttttagactggaataaacttttcaactaacttttgctcnnnn 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  7041315 ttccagcgaaaagtttctaatgtgattgtgatacaagctttattgtgattaatttagtttttagactggaataaacttttcaactaacttttgctcaaaa 7041216  T
Q  511 nnnnnnnnnnttgaaaagttatgacattgactatgtaagggttttcctaactaatatgt 569  Q
              |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7041215 aaaagaaaaattgaaaagttattacattgactatgtaagggttttcctaactaatatgt 7041157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 9171045 - 9170782
Alignment:
Q  11 gaacctgtggttggtcgtggaaacaagaaattcttagcggaaagcaagggagatttgttgttagcggatgtttatgaccct---------gatcttaacg 101  Q
    |||||| |||||||| |||| |||| ||||||||||| ||| ||| |||||||||||||||||||||| ||||||||   |         |||||||| |    
T  9171045 gaacctttggttggtggtgggaacatgaaattcttagtggagagcgagggagatttgttgttagcggacgtttatgattgtctttgtattgatcttaatg 9170946  T
Q  102 attctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttct------tgggaga 195  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||      ||||       
T  9170945 atcctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggtt 9170846  T
Q  196 agtatgttcgttctctgcttctgcttcggatttgtgcgttgccaaagggaattgtgtcatcttt 259  Q
     |||| |||||| |||| ||||||||| |||||||| ||| || ||||||||||| ||||||||    
T  9170845 ggtatattcgttttctgtttctgcttcagatttgtgtgtttcccaagggaattgtatcatcttt 9170782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 92 - 259
Target Start/End: Complemental strand, 7025894 - 7025721
Alignment:
Q  92 gatcttaacgattctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttct--- 188  Q
    |||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||       
T  7025894 gatcataatgattgtgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttgg 7025795  T
Q  189 ---tgggagaagtatgttcgttctctgcttctgcttcggatttgtgcgttgccaaagggaattgtgtcatcttt 259  Q
       ||||    ||||||||||| ||||||| |||||| |||||||| |||||||||||||||| ||||||||||    
T  7025794 ggttggggttggtatgttcgttttctgcttgtgcttcagatttgtgtgttgccaaagggaattctgtcatcttt 7025721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 89 - 259
Target Start/End: Complemental strand, 7012961 - 7012785
Alignment:
Q  89 cctgatcttaacgattctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttct 188  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||    
T  7012961 cctgatcttaaagatcctgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttct 7012862  T
Q  189 ------tgggagaagtatgttcgttctctgcttctgcttcggatttgtgcgttgccaaagggaattgtgtcatcttt 259  Q
          ||||    ||||||||||| ||||| | ||||||||||||||| |||||||||||||||| ||||||||||    
T  7012861 tggggttggggttggtatgttcgttttctgcctgtgcttcggatttgtgtgttgccaaagggaattctgtcatcttt 7012785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 9159383 - 9159646
Alignment:
Q  11 gaacctgtggttggtcgtggaaacaagaaattcttagcggaaagcaagggagatttgttgttagcggatgtttatgaccct---------gatcttaacg 101  Q
    |||||| |||||||| |||| ||||  |||||||||| ||| ||| ||||||||||||||||| |||| | ||||||   |         |||||||| |    
T  9159383 gaacctttggttggtggtgggaacataaaattcttagtggagagcgagggagatttgttgttatcggaggcttatgattgtcttagtattgatcttaatg 9159482  T
Q  102 attctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttc------ttgggaga 195  Q
    || |||||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||||      |||||       
T  9159483 atcctgtaaggattgatttgtttaagcttaacgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggtt 9159582  T
Q  196 agtatgttcgttctctgcttctgcttcggatttgtgcgttgccaaagggaattgtgtcatcttt 259  Q
     |||| |||||| |||| ||||||||| |||||||| ||| |||||||||||||| ||||||||    
T  9159583 ggtatattcgttttctgtttctgcttcagatttgtgtgtttccaaagggaattgtatcatcttt 9159646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 7029937 - 7029851
Alignment:
Q  106 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttggg 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  7029937 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttggg 7029851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 114 - 252
Target Start/End: Complemental strand, 7046955 - 7046817
Alignment:
Q  114 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||  ||||||||||||||   |  ||||||||| |||||    
T  7046955 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgttttctgc 7046856  T
Q  214 ttctgcttcggatttgtgcgttgccaaagggaattgtgt 252  Q
    ||||  ||| |||||||  ||||||||||||||||||||    
T  7046855 ttctttttcagatttgtatgttgccaaagggaattgtgt 7046817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 300 - 496
Target Start/End: Complemental strand, 7046757 - 7046555
Alignment:
Q  300 ttttggacttggatcagggtcggcattcgcctctatctgattatcctgaatattccaacttgttctggccacctccaaagtggatctgagttcgttatca 399  Q
    |||||||||||||||| ||| ||| | ||| | | |  |||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||    
T  7046757 ttttggacttggatcaaggttggcttccgcttttgtgcgattctcctgaatattccaacttgttttggccacctccaaagtggatctaagttcgttacca 7046658  T
Q  400 agtatg------ttatcttccagcgaaaagtttctaatgtgattgtgatacaagctttattgtgattaatttagtttttagactgg-aataaacttttca 492  Q
    ||||||      ||||||| ||  |||| |||||||||||||| ||||||  ||||||| | || ||||||||||| ||||||||| ||||||||||||     
T  7046657 agtatgttattgttatcttgcattgaaaggtttctaatgtgatagtgata-tagctttactatgcttaatttagttgttagactggaaataaacttttcg 7046559  T
Q  493 acta 496  Q
    ||||    
T  7046558 acta 7046555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 300 - 385
Target Start/End: Complemental strand, 7025665 - 7025580
Alignment:
Q  300 ttttggacttggatcagggtcggcattcgcctctatctgattatcctgaatattccaacttgttctggccacctccaaagtggatc 385  Q
    |||||||||||||||  ||||||||||||| | | || ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7025665 ttttggacttggatctaggtcggcattcgcttttgtccgattatcctgaatattccaacttgttctggccacctccagagtggatc 7025580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 300 - 412
Target Start/End: Complemental strand, 7012729 - 7012617
Alignment:
Q  300 ttttggacttggatcagggtcggcattcgcctctatctgattatcctgaatattccaacttgttctggccacctccaaagtggatctgagttcgttatca 399  Q
    |||||||||||||||| ||||| ||||||| | | ||||||| ||| ||||||||||||||||| ||||||||| || |||||||| ||  |||||| ||    
T  7012729 ttttggacttggatcaaggtcgacattcgcttttgtctgattgtcccgaatattccaacttgttatggccacctgcagagtggatccgacctcgttacca 7012630  T
Q  400 agtatgttatctt 412  Q
    |||| ||||||||    
T  7012629 agtaagttatctt 7012617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 300 - 434
Target Start/End: Original strand, 9159678 - 9159813
Alignment:
Q  300 ttttggacttggatcagggtcggcattcgcctctatctgattatcctgaatattccaacttgttctggccacctccaaagtggatctgagttcgttatca 399  Q
    |||||||||||||| | |||| || ||||| | | | |||| ||||||||||||||||||||||||||| ||||| ||  |||||| ||| |||||| ||    
T  9159678 ttttggacttggatgatggtcagctttcgcttttttatgataatcctgaatattccaacttgttctggctacctcgaacatggatccgagctcgttacca 9159777  T
Q  400 agtatgtt-atcttccagcgaaaagtttctaatgtg 434  Q
    |||||||| ||||| ||  |||| ||||||||||||    
T  9159778 agtatgttgatcttgcattgaaaggtttctaatgtg 9159813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 434
Target Start/End: Complemental strand, 9170750 - 9170615
Alignment:
Q  300 ttttggacttggatcagggtcggcattcgcctctatctgattatcctgaatattccaacttgttctggccacctccaaagtggatctgagttcgttatca 399  Q
    |||||||||||||| | |||| || ||||| | | | |||| |||||||||||||||||||| |||||| ||||| ||  |||||| ||| ||| || ||    
T  9170750 ttttggacttggatgatggtcagctttcgcttttttatgataatcctgaatattccaacttgctctggctacctcgaacatggatccgagctcggtacca 9170651  T
Q  400 agtatgtt-atcttccagcgaaaagtttctaatgtg 434  Q
    |||||||| ||||| ||  |||| ||||||||||||    
T  9170650 agtatgttgatcttgcattgaaaggtttctaatgtg 9170615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 7030049 - 7029980
Alignment:
Q  18 tggttggtcgtggaaacaagaaattcttagcggaaagcaagggagatttgttgttagcggatgtttatga 87  Q
    |||||||| |||||||   ||||||||||| ||| ||| |||| ||||||||||||||||||||||||||    
T  7030049 tggttggtggtggaaatgtgaaattcttagtggagagcgagggggatttgttgttagcggatgtttatga 7029980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 446 - 496
Target Start/End: Complemental strand, 7039798 - 7039748
Alignment:
Q  446 agctttattgtgattaatttagtttttagactggaataaacttttcaacta 496  Q
    |||||||||||| ||||||||||| ||||||  ||||||||||||||||||    
T  7039798 agctttattgtgcttaatttagttgttagaccagaataaacttttcaacta 7039748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 300 - 385
Target Start/End: Original strand, 213258 - 213343
Alignment:
Q  300 ttttggacttggatcagggtcggcattcgcctctatctgattatcctgaatattccaacttgttctggccacctccaaagtggatc 385  Q
    ||||| |||||||||| ||||| | |||  || | ||| ||| |||||||| ||||||||||||||||||||||||  ||||||||    
T  213258 ttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatc 213343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 7025973 - 7025925
Alignment:
Q  37 gaaattcttagcggaaagcaagggagatttgttgttagcggatgtttat 85  Q
    ||||||||||| ||| ||| |||| ||||||||||||||||||||||||    
T  7025973 gaaattcttagtggagagcgagggggatttgttgttagcggatgtttat 7025925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 7013063 - 7012987
Alignment:
Q  11 gaacctgtggttggtcgtggaaacaagaaattcttagcggaaagcaagggagatttgttgttagcggatgtttatga 87  Q
    |||||| |||||||| | ||  ||| ||||||||||| ||| ||| |||  |||||||||||||| |||||||||||    
T  7013063 gaacctttggttggtggcggggacatgaaattcttagtggagagcgaggaggatttgttgttagcagatgtttatga 7012987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 127 - 259
Target Start/End: Original strand, 9494821 - 9494953
Alignment:
Q  127 gcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgcttctgcttcggat 226  Q
    |||| |||||||||||| ||  |||||||| ||||  |||||||||||||||||||||||||||||  | | ||||||||| |||||||||||||| |||    
T  9494821 gcttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgat 9494920  T
Q  227 ttgtgcgttgccaaagggaattgtgtcatcttt 259  Q
    ||||||||| |||||||||||||||||||||||    
T  9494921 ttgtgcgtttccaaagggaattgtgtcatcttt 9494953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 106 - 257
Target Start/End: Original strand, 9695608 - 9695759
Alignment:
Q  106 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcg 205  Q
    |||||| |||||| | || | |||| |||||||||||||||||||||| |||||||| | ||||||||||||||||||||| ||||| ||||  ||||||    
T  9695608 tgtaagtattgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcg 9695707  T
Q  206 ttctctgcttctgcttcggatttgtgcgttgccaaagggaattgtgtcatct 257  Q
    |||||||| |||||||| || ||||| ||||| || ||||||||||||||||    
T  9695708 ttctctgcatctgcttcagagttgtgtgttgcaaatgggaattgtgtcatct 9695759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 108 - 252
Target Start/End: Complemental strand, 9343967 - 9343823
Alignment:
Q  108 taaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgtt 207  Q
    ||||| ||||| ||||||||||| |||||| ||||||||||||||||||||| || | |||||||||||| ||||||||||||||  | | |||||||||    
T  9343967 taagggttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgtt 9343868  T
Q  208 ctctgcttctgcttcggatttgtgcgttgccaaagggaattgtgt 252  Q
     ||||||||||||||||||||||| ||| | | ||| ||||||||    
T  9343867 ttctgcttctgcttcggatttgtgtgttcctagaggaaattgtgt 9343823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 41985726 - 41985599
Alignment:
Q  132 atgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgcttctgcttcggatttgtg 231  Q
    |||||||||||||||| ||||| |||||| | |||||||||||||| ||||||||||||||  | | ||||||||| ||||||||||||||||||||||     
T  41985726 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 41985627  T
Q  232 cgttgccaaagggaattgtgtcatcttt 259  Q
     |||| |||||| |||||||||||||||    
T  41985626 tgttgtcaaaggaaattgtgtcatcttt 41985599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 132 - 249
Target Start/End: Original strand, 9655375 - 9655492
Alignment:
Q  132 atgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgcttctgcttcggatttgtg 231  Q
    |||||||||||||||| |||||||||||||  | ||||||||||||||||||||| ||||| |||| ||||||||| ||||| || ||||||||||||||    
T  9655375 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgttttctgcatcagcttcggatttgtg 9655474  T
Q  232 cgttgccaaagggaattg 249  Q
     ||| |||||||||||||    
T  9655475 tgtttccaaagggaattg 9655492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 108 - 231
Target Start/End: Complemental strand, 9448436 - 9448313
Alignment:
Q  108 taaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgtt 207  Q
    ||||| ||||| ||||||||||| |||||||||||||||| ||||||||||| || | |||||||||||| ||||||||||||||  | |  ||||||||    
T  9448436 taagggttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgtt 9448337  T
Q  208 ctctgcttctgcttcggatttgtg 231  Q
     |||||||||||||||||||||||    
T  9448336 ttctgcttctgcttcggatttgtg 9448313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 132 - 249
Target Start/End: Original strand, 9646382 - 9646499
Alignment:
Q  132 atgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgcttctgcttcggatttgtg 231  Q
    |||||||||||||||| |||||||||||||  | ||||||||||||||||||||| || || |||| ||||||||| ||||| || ||||||||||||||    
T  9646382 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgttttttggcgaaggatgttcgttttctgcatcagcttcggatttgtg 9646481  T
Q  232 cgttgccaaagggaattg 249  Q
     ||| |||||||||||||    
T  9646482 tgtttccaaagggaattg 9646499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 9617481 - 9617608
Alignment:
Q  132 atgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttc-ttgggagaagtatgttcgttctctgcttctgcttcggatttgt 230  Q
    ||||||| |||||||| |||||||||||||  | |||||||||||||||||||||| ||| || | | |||||| || |||||||||||||| |||||||    
T  9617481 atgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtga-atggatgttcattttctgcttctgcttcagatttgt 9617579  T
Q  231 gcgttgccaaagggaattgtgtcatcttt 259  Q
    | ||| |||||||||||||||||||||||    
T  9617580 gtgtttccaaagggaattgtgtcatcttt 9617608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 149 - 259
Target Start/End: Complemental strand, 9407447 - 9407337
Alignment:
Q  149 tgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgcttctgcttcggatttgtgcgttgccaaagggaatt 248  Q
    |||||||||||||  |||||||||||||||||||||||||| |   | | |||||| || |||||||| |||||||||||||| ||||||||||||||||    
T  9407447 tgggtgaagttgatgagtttaggggatagggttttgttctttgtgaatggatgttcattttctgcttcagcttcggatttgtgtgttgccaaagggaatt 9407348  T
Q  249 gtgtcatcttt 259  Q
    ||||| |||||    
T  9407347 gtgtcttcttt 9407337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 105 - 257
Target Start/End: Complemental strand, 9336665 - 9336513
Alignment:
Q  105 ctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttc 204  Q
    ||||| |||||||| |||||| |||| ||||||| ||||| | |||||| ||| |||| | |||||| |||| |||||||||||||||  | | ||||||    
T  9336665 ctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttc 9336566  T
Q  205 gttctctgcttctgcttcggatttgtgcgttgccaaagggaattgtgtcatct 257  Q
    ||| |||||||||||||| || ||| |  ||||||| ||||||||||||||||    
T  9336565 gttttctgcttctgcttccgagttgggttttgccaatgggaattgtgtcatct 9336513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 149 - 259
Target Start/End: Complemental strand, 9425654 - 9425544
Alignment:
Q  149 tgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgcttctgcttcggatttgtgcgttgccaaagggaatt 248  Q
    |||||||||||||  |||||| || |||||||||||||||| |   | | |||||| || |||||||| |||||||||||||| ||||||||||||||||    
T  9425654 tgggtgaagttgatgagtttaaggaatagggttttgttctttgtgaatggatgttcattttctgcttcagcttcggatttgtgtgttgccaaagggaatt 9425555  T
Q  249 gtgtcatcttt 259  Q
    |||||||||||    
T  9425554 gtgtcatcttt 9425544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 105 - 257
Target Start/End: Complemental strand, 9329961 - 9329809
Alignment:
Q  105 ctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttc 204  Q
    ||||| |||||||| |||||| |||| ||||||| ||||| | |||||| |||||| | | |||||| |||| |||||||||||||||  | | || |||    
T  9329961 ctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaatggatattc 9329862  T
Q  205 gttctctgcttctgcttcggatttgtgcgttgccaaagggaattgtgtcatct 257  Q
    ||| |||||||||||||| || ||| |  ||||||| ||||||||||||||||    
T  9329861 gttttctgcttctgcttccgagttgggttttgccaatgggaattgtgtcatct 9329809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 114 - 252
Target Start/End: Original strand, 9485969 - 9486107
Alignment:
Q  114 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgc 213  Q
    ||||| |||||| |||| ||||||||||||||||||||||| || |||  | ||| ||||||| ||||||||| ||||| |||| |||| | || |||||    
T  9485969 ttgatgtgtttaggcttgatgagaaggagaagaagtgggtggaggtgagaaatttgggggatatggttttgtttttgggggaagaatgtgctttttctgc 9486068  T
Q  214 ttctgcttcggatttgtgcgttgccaaagggaattgtgt 252  Q
    ||| ||||||||||||||  ||| ||| ||||| |||||    
T  9486069 ttcggcttcggatttgtgtattggcaatgggaactgtgt 9486107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 122 - 259
Target Start/End: Complemental strand, 9353009 - 9352872
Alignment:
Q  122 tttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgcttctgctt 221  Q
    ||||||||| |||||| |||||||||||||||||||||||  |  ||||||| ||||||||||||  ||||    | ||||||||| |||||||||| ||    
T  9353009 tttaagcttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttctgcttctggtt 9352910  T
Q  222 cggatttgtgcgttgccaaagggaattgtgtcatcttt 259  Q
     |||| ||||  || ||||||| |||||||||||||||    
T  9352909 gggatctgtgtcttcccaaaggaaattgtgtcatcttt 9352872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 9395383 - 9395298
Alignment:
Q  106 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgg 191  Q
    ||||||||||||| |||||| |||| |||||||| |||| ||||||||||||||||||| |||||| |||  ||||||||||||||    
T  9395383 tgtaaggattgatgtgtttaggcttgatgagaagcagaaaaagtgggtgaagttgactaatttaggagatttggttttgttcttgg 9395298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 114 - 259
Target Start/End: Complemental strand, 41980970 - 41980825
Alignment:
Q  114 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgc 213  Q
    ||||| |||||| ||||  | |||| |||||||| ||||| |||||||| |||||||||||||| ||||||||||||||  | | ||||||||| | |||    
T  41980970 ttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgttttttgc 41980871  T
Q  214 ttctgcttcggatttgtgcgttgccaaagggaattgtgtcatcttt 259  Q
    |||||||||  ||||||  |||| |||||| |||||| | ||||||    
T  41980870 ttctgcttcaaatttgtctgttgtcaaaggaaattgtattatcttt 41980825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 152 - 259
Target Start/End: Complemental strand, 9397863 - 9397756
Alignment:
Q  152 gtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgcttctgcttcggatttgtgcgttgccaaagggaattgtg 251  Q
    ||||||||||  ||||||||||||||||| |||||||| |   | | |||||| || || ||||| |||| ||||||||| |||||||||||||||||||    
T  9397863 gtgaagttgatgagtttaggggatagggtcttgttctttgtgaatggatgttcattttccgcttcagctttggatttgtgtgttgccaaagggaattgtg 9397764  T
Q  252 tcatcttt 259  Q
    || |||||    
T  9397763 tcgtcttt 9397756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 9626498 - 9626625
Alignment:
Q  132 atgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgcttctgcttcggatttgtg 231  Q
    |||||||||||||||| |||||||| ||||  | ||||||||||||||||||||| || ||  ||| |   || || ||||| || ||||||||||||||    
T  9626498 atgagaaggagaagaaatgggtgaatttgatgaatttaggggatagggttttgttttttggcaaaggaacatcattttctgcatcagcttcggatttgtg 9626597  T
Q  232 cgttgccaaagggaattgtgtcatcttt 259  Q
     ||| |||||||||||||  ||||||||    
T  9626598 tgtttccaaagggaattgcatcatcttt 9626625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 9613916 - 9613964
Alignment:
Q  113 attgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttga 161  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  9613916 attgatttttttaagcttgatgagaaggagaagaagtgggtgaagttga 9613964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 9340769 - 9340679
Alignment:
Q  132 atgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttc-ttgggagaagtatgttcgttctctgcttctgcttc 222  Q
    ||||||||||||||||||||||||||||||  | ||| |||||||||||||| ||| ||||| |  | ||||||||| ||||||||||||||    
T  9340769 atgagaaggagaagaagtgggtgaagttgaggaatttcggggatagggtttttttcattgggcg-tggatgttcgttttctgcttctgcttc 9340679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 335 - 385
Target Start/End: Complemental strand, 9432770 - 9432720
Alignment:
Q  335 tctgattatcctgaatattccaacttgttctggccacctccaaagtggatc 385  Q
    ||||||||||||||||||| |||||||||||||||||||||  ||||||||    
T  9432770 tctgattatcctgaatattacaacttgttctggccacctccggagtggatc 9432720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 259
Target Start/End: Complemental strand, 9377194 - 9377057
Alignment:
Q  122 tttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgcttctgctt 221  Q
    ||||||||| |||||||   ||||||||||| ||||||||  |  |||||||||||| |||||||  ||||    | |||||||||  ||||||||||||    
T  9377194 tttaagcttgatgagaacaggaagaagtgggagaagttgaagaaattaggggataggattttgtttgtggggagtggatgttcgtttcctgcttctgctt 9377095  T
Q  222 cggatttgtgcgttgccaaagggaattgtgtcatcttt 259  Q
     |||| ||||  || ||||||| |||||||||||||||    
T  9377094 gggatctgtgtcttcccaaaggaaattgtgtcatcttt 9377057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 385
Target Start/End: Complemental strand, 9343754 - 9343678
Alignment:
Q  309 tggatcagggtcggcattcgcctctatctgattatcctgaatattccaacttgttctggccacctccaaagtggatc 385  Q
    ||||||| ||||||| ||| ||||| ||||||| |||||||||||  | ||||||||||||||||||  ||||||||    
T  9343754 tggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccggagtggatc 9343678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 229
Target Start/End: Complemental strand, 9756504 - 9756381
Alignment:
Q  106 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcg 205  Q
    ||||| ||||||| ||| || |||| ||||||| ||||| | |||||| ||||||   | ||| ||||||||||||||||| || || ||||  |||||     
T  9756504 tgtaaagattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttggtgaatttgggggatagggttttgtttttcggggaaggctgttca 9756405  T
Q  206 ttctctgcttctgcttcggatttg 229  Q
    |||||||| ||||| |||||||||    
T  9756404 ttctctgcatctgcatcggatttg 9756381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 384
Target Start/End: Complemental strand, 9329716 - 9329670
Alignment:
Q  338 gattatcctgaatattccaacttgttctggccacctccaaagtggat 384  Q
    |||||||||||||||| ||| |||||||||||||||||| |||||||    
T  9329716 gattatcctgaatatttcaagttgttctggccacctccagagtggat 9329670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 16011768 - 16011830
Alignment:
Q  200 tgttcgttctctgcttctgcttcggatttgtgcgttgccaaagggaattgtgtcatcttttgt 262  Q
    |||||||| ||||||||||||||||||||| | || || || ||||||||||| |||||||||    
T  16011768 tgttcgttttctgcttctgcttcggatttgggtgtagcgaatgggaattgtgtaatcttttgt 16011830  T

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Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 9348085 - 9347958
Alignment:
Q  132 atgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttc-ttgggagaagtatgttcgttctctgcttctgcttcggatttgt 230  Q
    ||||||||||||||||||||||||||||||    ||| ||||||||| |||| ||| ||||| |  | ||||||||| |||||||||||||| ||| | |    
T  9348085 atgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcg-tggatgttcgttttctgcttctgcttcagatctat 9347987  T
Q  231 gcgttgccaaagggaattgtgtcatcttt 259  Q
    |  || | ||||| ||||||||| |||||    
T  9347986 gtattccgaaaggaaattgtgtcgtcttt 9347958  T

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Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 9348143 - 9348095
Alignment:
Q  113 attgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttga 161  Q
    |||||||| ||||| ||| |||||||||||||||||||||||| |||||    
T  9348143 attgatttttttaaacttgatgagaaggagaagaagtgggtgaggttga 9348095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 9369739 - 9369612
Alignment:
Q  132 atgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttc-ttgggagaagtatgttcgttctctgcttctgcttcggatttgt 230  Q
    ||||||||||||||||||||||||||||||    ||| ||||||||| |||| ||| ||||| |  | ||||||||| |||||||||||||| ||| | |    
T  9369739 atgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcg-tggatgttcgttttctgcttctgcttcagatctat 9369641  T
Q  231 gcgttgccaaagggaattgtgtcatcttt 259  Q
    |  || | ||||| ||||||||| |||||    
T  9369640 gtattccgaaaggaaattgtgtcgtcttt 9369612  T

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Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 9416654 - 9416614
Alignment:
Q  149 tgggtgaagttgactagtttaggggatagggttttgttctt 189  Q
    |||||||||||||| ||||||||||||||||| ||||||||    
T  9416654 tgggtgaagttgacgagtttaggggatagggtgttgttctt 9416614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 9441816 - 9441856
Alignment:
Q  149 tgggtgaagttgactagtttaggggatagggttttgttctt 189  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  9441816 tgggtgaagttgatgagtttaggggatagggttttgttctt 9441856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 375
Target Start/End: Original strand, 9617668 - 9617735
Alignment:
Q  308 ttggatcagggtcggcattcgcctctatctgattatcctgaatattccaacttgttctggccacctcc 375  Q
    |||||||| ||||||| |||| || | |||  |||||||||||| | |||||||||||||||||||||    
T  9617668 ttggatcaaggtcggctttcgtctatgtctcgttatcctgaatacttcaacttgttctggccacctcc 9617735  T

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Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 13864320 - 13864237
Alignment:
Q  114 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaag 197  Q
    ||||| |||||| |||| |||||| |||||| ||||||||| || |||  | ||| ||||||||||||||||| ||||| ||||    
T  13864320 ttgatgtgtttaggcttgatgagagggagaaaaagtgggtggaggtgagaaatttgggggatagggttttgtttttgggggaag 13864237  T

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Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 9340827 - 9340779
Alignment:
Q  113 attgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttga 161  Q
    |||||||| ||| ||||| |||||||| ||||||||||||||| |||||    
T  9340827 attgatttttttgagcttgatgagaagaagaagaagtgggtgaggttga 9340779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 9369797 - 9369749
Alignment:
Q  113 attgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttga 161  Q
    |||||||| ||||| ||| |||||||||||||||||||| ||| |||||    
T  9369797 attgatttttttaaacttgatgagaaggagaagaagtggatgaggttga 9369749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 16011695 - 16011763
Alignment:
Q  106 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttagggga 174  Q
    ||||||||||||| |||||  |||  |||||||||||||||| ||||| || ||| ||| |||||||||    
T  16011695 tgtaaggattgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttagggga 16011763  T

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Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 127 - 259
Target Start/End: Original strand, 20694314 - 20694446
Alignment:
Q  127 gcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgcttctgcttcggat 226  Q
    |||| |||| ||||||||||| |||||||  ||||| ||||| ||||||||||||||||| |||||  | | ||||||||| ||||||||||||||||||    
T  20694314 gcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttttctgcttctgcttcggat 20694413  T
Q  227 ttgtgcgttgccaaagggaattgtgtcatcttt 259  Q
    ||||| |||||||||||||||||||||||||||    
T  20694414 ttgtgtgttgccaaagggaattgtgtcatcttt 20694446  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 385
Target Start/End: Original strand, 20694483 - 20694560
Alignment:
Q  308 ttggatcagggtcggcattcgcctctatctgattatcctgaatattccaacttgttctggccacctccaaagtggatc 385  Q
    |||||||| | ||||| ||| ||| | || ||||||||||||||||  |||||||||||||| |||||  ||||||||    
T  20694483 ttggatcaagatcggctttcacctttgtccgattatcctgaatattttaacttgttctggcctcctcctgagtggatc 20694560  T

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Target: chr1 (Bit Score: 73; Significance: 5e-33; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 120 - 248
Target Start/End: Complemental strand, 235323 - 235195
Alignment:
Q  120 tgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgcttctgc 219  Q
    |||||||||||||||| |||||||||||||||||||||||| | | |||||||||||| ||||| ||||||||     |||||||||| |||||||||||    
T  235323 tgtttaagcttaatgaaaaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttcttggggttgctatgttcgttttctgcttctgc 235224  T
Q  220 ttcggatttgtgcgttgccaaagggaatt 248  Q
    |||||||||||| ||| ||||||||||||    
T  235223 ttcggatttgtgtgttcccaaagggaatt 235195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 110 - 252
Target Start/End: Original strand, 8814358 - 8814500
Alignment:
Q  110 aggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttct 209  Q
    ||||||||  ||||||||||||| || |||||||||||||||||||||||| | | |||||||||||| |||||||| |||||     | ||||| || |    
T  8814358 aggattgacatgtttaagcttaacgaaaaggagaagaagtgggtgaagttggcgaatttaggggatagagttttgtttttggggtccttgtgttcatttt 8814457  T
Q  210 ctgcttctgcttcggatttgtgcgttgccaaagggaattgtgt 252  Q
    |||||||||||| ||||||||| ||| ||||||||||||||||    
T  8814458 ctgcttctgctttggatttgtgtgttcccaaagggaattgtgt 8814500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 106 - 256
Target Start/End: Complemental strand, 246991 - 246841
Alignment:
Q  106 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcg 205  Q
    |||||||||||| ||||||||||||||||  | ||||||||| |||||||||||| ||| |||||| ||||  ||||||||||||||     | || ||     
T  246991 tgtaaggattgacttgtttaagcttaatgcaagggagaagaaatgggtgaagttggctaatttaggagatacagttttgttcttggggttgttctggtca 246892  T
Q  206 ttctctgcttctgcttcggatttgtgcgttgccaaagggaattgtgtcatc 256  Q
    || ||||||||||||| ||||||||| |||  |||||||||||||||||||    
T  246891 ttttctgcttctgctttggatttgtgtgttcacaaagggaattgtgtcatc 246841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 164 - 259
Target Start/End: Complemental strand, 4439926 - 4439831
Alignment:
Q  164 agtttaggggatagggttttgttcttgggagaagtatgttcgttctctgcttctgcttcggatttgtgcgttgccaaagggaattgtgtcatcttt 259  Q
    ||||| || |||||||||||||| |||||  | | ||||||||| ||||||||||||||||||||||| ||| | |||||||||||||||||||||    
T  4439926 agtttgggagatagggttttgtttttggggaatggatgttcgttttctgcttctgcttcggatttgtgtgtttctaaagggaattgtgtcatcttt 4439831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 106 - 256
Target Start/End: Complemental strand, 231705 - 231549
Alignment:
Q  106 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcg 205  Q
    ||||||||| ||| |||||||||| ||||  ||||||| |||||||||||||||| ||| |||||||||||  ||||||||||||||     |||||||     
T  231705 tgtaaggatagatgtgtttaagctcaatgcaaaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttggggtccctatgttca 231606  T
Q  206 ttctctgcttctgcttc------ggatttgtgcgttgccaaagggaattgtgtcatc 256  Q
    || ||||||||||||||      |||||| || ||| | ||||||||||||||||||    
T  231605 ttttctgcttctgcttctgctttggatttatgtgttccaaaagggaattgtgtcatc 231549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 252
Target Start/End: Original strand, 251400 - 251532
Alignment:
Q  120 tgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgcttctgc 219  Q
    |||||||||||||||| ||||| ||||||||||| |||||| | | | |||||||||| ||||||||||||||     ||||||| || |||| ||||||    
T  251400 tgtttaagcttaatgaaaaggaaaagaagtgggtaaagttggcgaatataggggatagagttttgttcttggggtggctatgttcattttctgtttctgc 251499  T
Q  220 ttcggatttgtgcgttgccaaagggaattgtgt 252  Q
     ||||||||||| |||   ||| ||||||||||    
T  251500 atcggatttgtgtgttcggaaacggaattgtgt 251532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 259
Target Start/End: Complemental strand, 18991267 - 18991175
Alignment:
Q  167 ttaggggatagggttttgttcttgggagaagtatgttcgttctctgcttctgcttcggatttgtgcgttgccaaagggaattgtgtcatcttt 259  Q
    |||||| |||||||||||||||||||  | | ||||||||| |||||||||||||| ||||| |  |||| |||||||||||||||| |||||    
T  18991267 ttagggaatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgatttatctgttgtcaaagggaattgtgtcgtcttt 18991175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 120 - 259
Target Start/End: Complemental strand, 4428741 - 4428602
Alignment:
Q  120 tgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgcttctgc 219  Q
    |||||| |||| ||||||||| |   || |||||||| ||||| ||||| ||||||||||||||||| |||||  | | ||||| ||| ||||| |||||    
T  4428741 tgtttaggcttgatgagaaggcgcgtaaatgggtgaaattgacgagtttgggggatagggttttgtttttggggaatggatgtttgttttctgcctctgc 4428642  T
Q  220 ttcggatttgtgcgttgccaaagggaattgtgtcatcttt 259  Q
    ||| || ||||  ||| | |||||||||||||||||||||    
T  4428641 ttctgagttgtctgttactaaagggaattgtgtcatcttt 4428602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 300 - 384
Target Start/End: Original strand, 8814548 - 8814632
Alignment:
Q  300 ttttggacttggatcagggtcggcattcgcctctatctgattatcctgaatattccaacttgttctggccacctccaaagtggat 384  Q
    |||||||||||||| | ||||| | || |||| | |  ||||||||||||||||| || ||||||||||||||||||||||||||    
T  8814548 ttttggacttggatgatggtcgacctttgcctttgttcgattatcctgaatattctaaattgttctggccacctccaaagtggat 8814632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 385
Target Start/End: Complemental strand, 4439775 - 4439690
Alignment:
Q  300 ttttggacttggatcagggtcggcattcgcctctatctgattatcctgaatattccaacttgttctggccacctccaaagtggatc 385  Q
    |||| ||||||||||| ||   || ||||||| | ||||||| |||||| ||||  |||||||||||||||||| || ||||||||    
T  4439775 tttttgacttggatcaaggaaagctttcgcctttgtctgattgtcctgactattttaacttgttctggccacctgcagagtggatc 4439690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 105 - 260
Target Start/End: Complemental strand, 33541777 - 33541622
Alignment:
Q  105 ctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttc 204  Q
    ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||| |  |||||||| ||||  ||||||||||| || |  |  |||||    
T  33541777 ctgtaaggattcatttgtttaagcttaatgagaaggagacggagtgggtgaagttaaagagtttaggagatattgttttgttcttaggggctgactgttc 33541678  T
Q  205 gttctctgcttctgcttcggatttgtgcgttgccaaagggaattgtgtcatctttt 260  Q
     || ||||| |||||||| ||||||| |||||||||||| ||||||||| ||||||    
T  33541677 cttttctgcatctgcttctgatttgtccgttgccaaaggtaattgtgtcctctttt 33541622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 107 - 252
Target Start/End: Complemental strand, 18571234 - 18571086
Alignment:
Q  107 gtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggata---gggttttgttcttgggagaagtatgtt 203  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||     ||||||||||| ||    | | |||    
T  18571234 gtaaggattgatttctttaagcttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggatacagttgttttgttcttaggcatggcaggtt 18571135  T
Q  204 cgttctctgcttctgcttcggatttgtgcgttgccaaagggaattgtgt 252  Q
    | || |||  |||||||||||||||||| ||| ||||||||||||||||    
T  18571134 ctttttctatttctgcttcggatttgtgtgtttccaaagggaattgtgt 18571086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 33541859 - 33541810
Alignment:
Q  38 aaattcttagcggaaagcaagggagatttgttgttagcggatgtttatga 87  Q
    |||||||||| ||| |||||||| ||||||||||||| ||||||||||||    
T  33541859 aaattcttagtggagagcaagggtgatttgttgttagtggatgtttatga 33541810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 122 - 261
Target Start/End: Complemental strand, 3695797 - 3695659
Alignment:
Q  122 tttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgcttctgctt 221  Q
    ||||| |||||||||||| ||||||||||  | ||||||   |||||||||||||| ||||||||||| ||     ||||||| || ||||||  |||||    
T  3695797 tttaaacttaatgagaagaagaagaagtga-tcaagttgtagagtttaggggatagagttttgttcttcggtatcatatgttcattttctgctattgctt 3695699  T
Q  222 cggatttgtgcgttgccaaagggaattgtgtcatcttttg 261  Q
    |||||||||  | |||||||||||||||||| ||||||||    
T  3695698 cggatttgtctgctgccaaagggaattgtgtgatcttttg 3695659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 450102 - 450219
Alignment:
Q  105 ctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttc 204  Q
    ||||| |||||||| |||||| |||| ||||||||||||| |||||||| |||||||  | |||||| ||||   |||||||||| || ||  | | |||    
T  450102 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgttcttaggcgatctgtattc 450201  T
Q  205 gttctctgcttctgcttc 222  Q
     || ||||||||||||||    
T  450202 cttttctgcttctgcttc 450219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 373
Target Start/End: Complemental strand, 3695570 - 3695539
Alignment:
Q  342 atcctgaatattccaacttgttctggccacct 373  Q
    ||||||||||||||||||||||||||||||||    
T  3695570 atcctgaatattccaacttgttctggccacct 3695539  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 114 - 258
Target Start/End: Original strand, 44688785 - 44688929
Alignment:
Q  114 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgc 213  Q
    ||||| |||| | ||| ||||||||| | ||||| ||||| ||||| || ||||||||| ||||  |||||||||||||  | | || ||| || ||| |    
T  44688785 ttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattttctac 44688884  T
Q  214 ttctgcttcggatttgtgcgttgccaaagggaattgtgtcatctt 258  Q
    | |||||||||||||||   ||||||||||||||||||| |||||    
T  44688885 tactgcttcggatttgtctattgccaaagggaattgtgtaatctt 44688929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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