View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9247_high_8 (Length: 456)
Name: NF9247_high_8
Description: NF9247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9247_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 439
Target Start/End: Original strand, 26315937 - 26316362
Alignment:
| Q |
15 |
agacagaaaatgtaaggaagcagtgtactaacaaaagggtcacaccattgctcgagaaaactttgaaatgttgctttcattagtggaaaaagacagtaaa |
114 |
Q |
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| T |
26315937 |
agacagaaaatgtaaggaagcagtgtactaacaaaagggtcacaccattgctcgagaaaactttgaaatgttgctttcattagtggaaaaagacagtaaa |
26316036 |
T |
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| Q |
115 |
tcagaggaaacaaaaagactacannnnnnngttaggcccttacaccccc-tccacacacacttgaattttttcattcaagttctgnnnnnnnntctaata |
213 |
Q |
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| T |
26316037 |
tcagaggaaacaaaaagactacacccccccgttaggcccttacacccccctccacacacacttgaatcttttcattcaagttctgaaaaaaaatctaata |
26316136 |
T |
|
| Q |
214 |
nnnnnnncttctgactgattctctcttattattaccacgtatgcatgcaagggtcattcaatttgtttgattacttccaaaagtaggagaatctcaatct |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26316137 |
tttttttcttctgactgattctctcttattattaccacgtatgcatgcaagggtcattcaatttgtttgattacttccaaaagtaggagaatctcaatct |
26316236 |
T |
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| Q |
314 |
cactgaccttatcatatagtacaatattattatatatgtttttcaatgttttgagataaatagtatatatgagcagtgttgtagatgtggtatatcaaag |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26316237 |
cactgaccttatcatatagtacaatattattatatatgtttttcaatgttttgagataaatagtatatatgagcagtgttgtagatgtggtatatcaaag |
26316336 |
T |
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| Q |
414 |
gtttttatttcatctactcaaaaata |
439 |
Q |
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| T |
26316337 |
gtttttatttcatctactcaaaaata |
26316362 |
T |
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