View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9247_low_1 (Length: 913)
Name: NF9247_low_1
Description: NF9247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9247_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-173; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 589 - 901
Target Start/End: Original strand, 33272836 - 33273148
Alignment:
| Q |
589 |
tatatgcctaaccaaataaaactagcttagaaaaaagatcaaggattttaaataccgggcatattaatggttgcgatccccttataatctttgatatgtg |
688 |
Q |
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| T |
33272836 |
tatatgcctaaccaaataaaactagcttagaaaaaagatcaaggattttaaataccgggcatattaatggttgcgatccccttataatctttgatatgtg |
33272935 |
T |
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| Q |
689 |
aaaatcaaagtgaaatacggtggatgcaacttcaatcacattgttttacaattttggcaacataaaaattgttatattgtgatctagattgcgattgtga |
788 |
Q |
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| T |
33272936 |
aaaatcaaagtgaaatacggtggatgcaacttcaatcacattgttttacaattttggcaacataaaaattgttatattgtgatctagattgcgattgtga |
33273035 |
T |
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| Q |
789 |
acctttatttataacccttagcagaaggtacactcttcgctaattgtcgacgaccatccctcgaaacactagttggatcaaccacatctcccaatcttcc |
888 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33273036 |
acctttatttataacccttagcagaaggtacactcttagctaattgtcgacgaccatccctcgaaacactagttggatcaaccacatctcccaatcttcc |
33273135 |
T |
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| Q |
889 |
acatacaacacca |
901 |
Q |
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| T |
33273136 |
acatacaacacca |
33273148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 323 - 517
Target Start/End: Original strand, 33272578 - 33272772
Alignment:
| Q |
323 |
attcgagagctctattgaataatgtcatgcatcgttctttaattttagggattgtcatgcatagcatattaaattcctttctatatctaagctacttggt |
422 |
Q |
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| T |
33272578 |
attcgagagctctattgaataatgtcatgcatcgatctttaattttagggattgtcatgcatagcatattaaattcctttctatatctaagctacttggt |
33272677 |
T |
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| Q |
423 |
ctacaatataatcatatatatttaactcaaactttgaatgtatttatcaacaaatattctacaataactaacaataaagtataagcaatcccctt |
517 |
Q |
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| T |
33272678 |
ctacaatataatcatatatatttaactcaaactttgaatgtatttatcaacaaatattctacaataactaacaataaagtataagcaatcccctt |
33272772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 95 - 203
Target Start/End: Original strand, 33272466 - 33272574
Alignment:
| Q |
95 |
aattggcaaataaaaatcaatattaataatggtgatatcaatgatcattttacaaccgtctcacatgagaattgaactcatctattgaggttacaaagtt |
194 |
Q |
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| T |
33272466 |
aattggcaaataaaaatcaatattaataatggtgatatcaatgatcattttacaaccgtctcacatgaaaattgaactcatctattgaggttacaaagtt |
33272565 |
T |
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| Q |
195 |
aaattttta |
203 |
Q |
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||||||||| |
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| T |
33272566 |
aaattttta |
33272574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 33272259 - 33272339
Alignment:
| Q |
18 |
caatgtacgttgcaccaccaacatacacacacattgttcttcaagaattaacgacaacatgatg-aagatcataggacaat |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |
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| T |
33272259 |
caatgtacgttgcaccaccaacatacacacacattgttcttcaagaattaacgacaacatgacgaaaaatcataggacaat |
33272339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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