View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9247_low_14 (Length: 492)
Name: NF9247_low_14
Description: NF9247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9247_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 34374603 - 34374127
Alignment:
| Q |
1 |
ggaactgatcgaagcatccgggttgagtcgagtcgacgaagataaaaagcgcggtcttgatcatggaacatgggtgcctctcatgttgatgtatccagag |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34374603 |
ggaactgatcgaagcatccgggttgagtcgagtcgacgaagataaaaagcgtggtcttgatcatggaacatgggtgcctctcatgttgatgtatccagag |
34374504 |
T |
|
| Q |
101 |
gctgatataccagtatgtcaactttctgtttcatcaaatagaaatggcacttaccattataacttaggaaaagcaatagctcctcttaaagatgagggtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34374503 |
gctgatataccagtatgtcaactttctgtttcatcaaatagaaatggcacttaccattataacttaggaaaagcaatagctcctcttaaagatgagggtg |
34374404 |
T |
|
| Q |
201 |
ttctaataatcggatccggaagtgccactcataatatgagagcaattggtcctcgtgaaagccctcctcctccctgggctctggcattcgattcctggtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34374403 |
ttctaataatcggatccggaagtgccactcataatatgagagcaattggtcctcgtgaaagccctcctcctccctgggctctggcattcgattcctggtt |
34374304 |
T |
|
| Q |
301 |
aaaagaatctcttgtcgaaggaaggtaggtgtcgtgttgccttctttatttcacatcgcattaataaccatgttgccaaatagcaagtatagtttagtgg |
400 |
Q |
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|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34374303 |
aaaagaatctctcgtcgaaggaaggtatgtgtcgtgttgccttctttatttcacgtcgcattaataaccatgttgccaaatagcaagtatagtttagtgg |
34374204 |
T |
|
| Q |
401 |
aatttgaacagactactattgttctatgatatgcgatttggtacaaaatgttgtcaaattgcagctagtggtgctat |
477 |
Q |
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| T |
34374203 |
aatttgaacagactactattgttctatgatacgcgatttggtacaaaatgttgtcaaattgcagctagtggtgctat |
34374127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 467
Target Start/End: Original strand, 50322035 - 50322107
Alignment:
| Q |
395 |
tagtggaatttgaacagactactattgttctatgatatgcgatttggtacaaaatgttgtcaaattgcagcta |
467 |
Q |
| |
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|||||||||||||||| || |||||||||||| |||| | |||| ||| ||||| ||||||||||||||||| |
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| T |
50322035 |
tagtggaatttgaacaaaccactattgttctacgatacacaatttagtataaaatattgtcaaattgcagcta |
50322107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 8 - 382
Target Start/End: Original strand, 12850857 - 12851232
Alignment:
| Q |
8 |
atcgaagcatccgggttgagtcgagtcgacgaagataaaaagcgc-ggtcttgatcatggaacatgggtgcctctcatgttgatgtatccagaggctgat |
106 |
Q |
| |
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|||||||| ||||||||||||| || |||||||||||||| ||| ||||||||||||||| |||||||||||| |||||||||||||| ||||||||| |
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| T |
12850857 |
atcgaagcgtccgggttgagtcaggtagacgaagataaaaaacgccggtcttgatcatggagcatgggtgcctcaaatgttgatgtatcctgaggctgat |
12850956 |
T |
|
| Q |
107 |
ataccagtatgtcaactttctgtttcatcaaatagaaatggcacttaccattataacttaggaaaagcaatagctcctcttaaagatgagggtgttctaa |
206 |
Q |
| |
|
|||||||| ||||| |||||| |||| || |||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| |
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| T |
12850957 |
ataccagtgtgtcagctttctatttcttctgatagaaatggtacttaccattataacttaggaaaagcattagctcctcttaaagacgagagtgttctaa |
12851056 |
T |
|
| Q |
207 |
taatcggatccggaagtgccactcataatatgagagcaattggtcctcgtgaaagccctcctcctccctgggctctggcattcgattcctggttaaaaga |
306 |
Q |
| |
|
|| ||||||||| || |||||||||||| | || || ||||| |||||| ||||| |||||| |||||||||| | | ||| || ||||||||| | |
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| T |
12851057 |
tactcggatccgaaaatgccactcataacaagacagtaattgctcctcgcgaaagtcctccttttccctgggctgttgaatttatgtcttggttaaaaaa |
12851156 |
T |
|
| Q |
307 |
atctcttgtcgaaggaaggtaggtgtcgtgttgccttctttatttcacatcgcattaataaccatgttgccaaata |
382 |
Q |
| |
|
||||| ||||||||| ||| |||| ||||| | || ||||||||| || || ||||| | ||||||| ||||| |
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|
| T |
12851157 |
ttctctcatcgaaggaaagtatgtgttgtgttacgttttttatttcatgtcacactaatatcaatgttgctaaata |
12851232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 32 - 225
Target Start/End: Complemental strand, 24059525 - 24059332
Alignment:
| Q |
32 |
gtcgacgaagataaaaagcgcggtcttgatcatggaacatgggtgcctctcatgttgatgtatccagaggctgatataccagtatgtcaactttctgttt |
131 |
Q |
| |
|
||||| ||||| ||||| | |||||||||||||| | ||||| || |||||||| ||||||||||| ||||| || ||||| ||||| ||||||||| |
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| T |
24059525 |
gtcgatgaagacaaaaaaagaggtcttgatcatggtgcttgggttccactcatgttaatgtatccagaagctgacattccagtttgtcagctttctgttc |
24059426 |
T |
|
| Q |
132 |
catcaaatagaaatggcacttaccattataacttaggaaaagcaatagctcctcttaaagatgagggtgttctaataatcggatccggaagtgc |
225 |
Q |
| |
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||| | |||| ||||||||||||||||||||||||||| | || |||||||||||||| ||||| ||||||| || || |||||||| |
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| T |
24059425 |
aatctgacttggatggaacttaccattataacttaggaaaagcattggcacctcttaaagatgaaggtgtgttaataatgggttctggaagtgc |
24059332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 386 - 458
Target Start/End: Original strand, 2457201 - 2457273
Alignment:
| Q |
386 |
agtatagtttagtggaatttgaacagactactattgttctatgatatgcgatttggtacaaaatgttgtcaaa |
458 |
Q |
| |
|
|||||||| |||||||||||||| | || ||||||||| | |||||||| |||| |||||||||||||||||| |
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| T |
2457201 |
agtatagtgtagtggaatttgaaaaaacgactattgttttgtgatatgctatttagtacaaaatgttgtcaaa |
2457273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 467
Target Start/End: Original strand, 2732930 - 2733002
Alignment:
| Q |
395 |
tagtggaatttgaacagactactattgttctatgatatgcgatttggtacaaaatgttgtcaaattgcagcta |
467 |
Q |
| |
|
||||| |||||||||| | |||||||| | ||||||| |||| ||||||||||||||||||| ||||||| |
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|
| T |
2732930 |
tagtgaaatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaatagcagcta |
2733002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 459
Target Start/End: Complemental strand, 28044777 - 28044717
Alignment:
| Q |
399 |
ggaatttgaacagactactattgttctatgatatgcgatttggtacaaaatgttgtcaaat |
459 |
Q |
| |
|
|||||||||| | |||||||||||| | ||||||||||||| ||||||| ||||||||||| |
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|
| T |
28044777 |
ggaatttgaataaactactattgttttgtgatatgcgatttagtacaaagtgttgtcaaat |
28044717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 14199986 - 14200053
Alignment:
| Q |
388 |
tatagtttagtggaatttgaacagactactattgttctatgatatgcgatttggtacaaaatgttgtc |
455 |
Q |
| |
|
||||| |||||| |||||||||| ||| ||| |||||| ||||||| |||||||||||| ||||||| |
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|
| T |
14199986 |
tatagcttagtgtaatttgaacaaactgctaatgttctgcgatatgctatttggtacaaagtgttgtc |
14200053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 467
Target Start/End: Complemental strand, 39159798 - 39159730
Alignment:
| Q |
399 |
ggaatttgaacagactactattgttctatgatatgcgatttggtacaaaatgttgtcaaattgcagcta |
467 |
Q |
| |
|
||||||| |||| || ||||||||||| |||||||| |||| ||||||| |||| ||||| ||||||| |
|
|
| T |
39159798 |
ggaattttaacaaaccactattgttctgtgatatgcaatttagtacaaagcgttgacaaatagcagcta |
39159730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 459
Target Start/End: Original strand, 13298527 - 13298587
Alignment:
| Q |
399 |
ggaatttgaacagactactattgttctatgatatgcgatttggtacaaaatgttgtcaaat |
459 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||||| |||| ||||||| || |||||||| |
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|
| T |
13298527 |
ggaatttgaacaaatcactattgttctgtgatatgctatttagtacaaagtgctgtcaaat |
13298587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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