View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9247_low_2 (Length: 715)
Name: NF9247_low_2
Description: NF9247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9247_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 176 - 694
Target Start/End: Complemental strand, 37811738 - 37811220
Alignment:
| Q |
176 |
gaagcaaagaaggaacgtaggagatttggtgataaacttggaagcctctctagtagtgatgccttagcaaaggctaagaaggctttacaaattcagaaat |
275 |
Q |
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| T |
37811738 |
gaagcaaagaaggaacgtaggagatttggtgataaacttggaagcctctctagtagtgatgccttagcaaaggctaagaaggctttacaaattcagaaat |
37811639 |
T |
|
| Q |
276 |
tgttatcagagaagctgaagaaaattcctcagttgaataagagaaccaaagctcctgttcttcgtcttgacgcccagggacgtgaaatagatgtacatgg |
375 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37811638 |
tgttgtcagagaagctgaagaaaattcctcagttgaataagagaaccaaagctccttttcttcgtcttgacgcccagggacgtgaaatagatgaacatgg |
37811539 |
T |
|
| Q |
376 |
aaatgttgttaatgtaactaagccaagcaaccttagcacattaaaggtcaacattaataaacagaagaaagatgcatttgaaatactaaaacctgtattg |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37811538 |
aaatgttgttaatgtaactaagccaagcaaccttagcacattaaaggtcaacattaataaacagaagaaagatgcatttgaaatactaaaacctgtattg |
37811439 |
T |
|
| Q |
476 |
gatgttaatcctgaatctaatcctcattttgatgaaagaatgggtatcgacaaaacaaagctcctgcggcctaagaggatgaattttctgtttgtggagg |
575 |
Q |
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| T |
37811438 |
gatgttaatcctgaatctaatcctcattttgatgaaagaatgggtatcgacaaaacaaagctcctgcggcctaagaggatgaattttctgtttgtggagg |
37811339 |
T |
|
| Q |
576 |
aaggaaaatggtcaagagatgctgaatcaataaaatggaagagtaaatttggagaagctcaagcaaaagaacaaaaggacaaacaagcacagctagcaaa |
675 |
Q |
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| T |
37811338 |
aaggaaaatggtcaagagatgctgaatcaataaaatggaagagtaaatttggagaagctcaagcaaaagaacagaaggacaaacaagcacagctagcaaa |
37811239 |
T |
|
| Q |
676 |
ggcaaaggctgctcctgat |
694 |
Q |
| |
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||||||||||||||||||| |
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| T |
37811238 |
ggcaaaggctgctcctgat |
37811220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 37811925 - 37811761
Alignment:
| Q |
13 |
cagagaagaccgagacagggataggggatacgacagagacgaaagagagggtagcaaaggtaggtctaaatcgaaacgcgatgaagagatggagtattca |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37811925 |
cagagaagaccgagacagggataggggatacgacagagacgaaagagagggtagctaaggtaggtctaaatcgaagcgcgatgaagagatggagtattca |
37811826 |
T |
|
| Q |
113 |
gtggaaactcgatactccttgcataagaggaaagatagagaacatagcgaggatagggaattgga |
177 |
Q |
| |
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| T |
37811825 |
gtggaaactcgatactccttgcataagaggaaagatagagaacatagcgaggatagggaattgga |
37811761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 209 - 535
Target Start/End: Complemental strand, 17209179 - 17208860
Alignment:
| Q |
209 |
aaacttggaagcctctctagtagtgatgccttagcaaaggctaagaaggctttacaaattcagaaattgttatcagagaagctgaagaaaattcctcagt |
308 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||| |||||||||||||||| |
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| T |
17209179 |
aaacttggaagcttctctagtagtgatgccttagcaaaggctaagaaggctttacaaatgcagaaattattatcatagaagccgaagaaaattcctcag- |
17209081 |
T |
|
| Q |
309 |
tgaataagagaaccaaagctcctgttcttcgtcttgacgcccagggacgtgaaatagatgtacatggaaatgttgttaatgtaactaagccaagcaacct |
408 |
Q |
| |
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|| |||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
17209080 |
-----aaaccaaccaaggctccttttcttcgtcttgacgcccagggacgtgaaatagatgaacatggaaatgttgttaatgtaactaagccaagcaac-t |
17208987 |
T |
|
| Q |
409 |
tagcacattaaaggtcaacattaataaacagaagaaagatgcatttgaaatactaaaacctgtattggatgttaatcctgaatctaatcctcattttgat |
508 |
Q |
| |
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||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
17208986 |
tagcacattaaaggtcatcattaataaacataagaaagatgcatttgaaatactaaaacctgtattggatgtcgatcctgaatctaatcctcatttcgac |
17208887 |
T |
|
| Q |
509 |
gaaagaatgggtatcgacaaaacaaag |
535 |
Q |
| |
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|| |||||||||||||||||||||||| |
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| T |
17208886 |
gagagaatgggtatcgacaaaacaaag |
17208860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 269 - 478
Target Start/End: Complemental strand, 17200181 - 17199985
Alignment:
| Q |
269 |
cagaaattgttatcagagaagctgaagaaaattcctcagttgaataagagaaccaaagctcctgttcttcgtcttgacgcccagggacgtgaaatagatg |
368 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17200181 |
cagaaattattgtcagagaagctgaagaaaattcctcag------aaaccaaccaaggctcctgttcttcgtcttgacgcccagggacgtgaaatagatg |
17200088 |
T |
|
| Q |
369 |
tacatggaaatgttgttaatgtaactaagccaagcaaccttagcacattaaaggtcaacattaataaacagaagaaagatgcatttgaaatactaaaacc |
468 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17200087 |
aacatggaaattttgttaatgtaactaagccaagcaaccttagc-------agctcaacattaataaacataagaaagatgcatttgaaatactaaaacc |
17199995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 27 - 177
Target Start/End: Complemental strand, 17209586 - 17209436
Alignment:
| Q |
27 |
acagggataggggatacgacagagacgaaagagagggtagcaaaggtaggtctaaatcgaaacgcgatgaagagatggagtattcagtggaaactcgata |
126 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||| || |||||| | | | |||||||||||| |||||||| || | | ||| |
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| T |
17209586 |
acagggataggggatacgatagagacgaaagagagggtaacaaaggtaggtatatatcgaagcactacgaagagatggaggattcagtgaaaccgcaata |
17209487 |
T |
|
| Q |
127 |
ctccttgcataagaggaaagatagagaacatagcgaggatagggaattgga |
177 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
17209486 |
ctcctcgcataagaggaaagatagagaacatagcgaggaccgggaattgga |
17209436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 558 - 667
Target Start/End: Complemental strand, 17199986 - 17199878
Alignment:
| Q |
558 |
attttctgtttgtggaggaaggaaaatggtcaagagatgctgaatcaataaaatggaagagtaaatttggagaagctcaagcaaaagaacaaaaggacaa |
657 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| ||| || |||| || |
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| T |
17199986 |
attttctgtttgtggaggatggaaaatggtcaagagatgctgaatcaataaaattgaagagtgaatttggagaagctcaa-caagagagcagaaggcgaa |
17199888 |
T |
|
| Q |
658 |
acaagcacag |
667 |
Q |
| |
|
|||||||||| |
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| T |
17199887 |
acaagcacag |
17199878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 5e-95; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 420 - 616
Target Start/End: Complemental strand, 52355501 - 52355305
Alignment:
| Q |
420 |
aggtcaacattaataaacagaagaaagatgcatttgaaatactaaaacctgtattggatgttaatcctgaatctaatcctcattttgatgaaagaatggg |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
52355501 |
aggtcaacattaataaacagaagaaagatgcatttgaaatactaaaacctgtattggatgtcgatcctgaatctaatcctcattttgatgagagaatggg |
52355402 |
T |
|
| Q |
520 |
tatcgacaaaacaaagctcctgcggcctaagaggatgaattttctgtttgtggaggaaggaaaatggtcaagagatgctgaatcaataaaatggaag |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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|
| T |
52355401 |
tatcgacaaaacaaagctcctgcggcctaagaggatgaattttctgtttgtggaggaaggaaaatggtcaagagacgctgaatcaataaaattgaag |
52355305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 319 - 423
Target Start/End: Complemental strand, 52355691 - 52355587
Alignment:
| Q |
319 |
aaccaaagctcctgttcttcgtcttgacgcccagggacgtgaaatagatgtacatggaaatgttgttaatgtaactaagccaagcaaccttagcacatta |
418 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52355691 |
aaccaaggctcctgttcttcgtcttgatgcccagggacgtgaaatagatgaacatggaaatgttgttaatgtgactaagccaagcaaccttagcacatta |
52355592 |
T |
|
| Q |
419 |
aaggt |
423 |
Q |
| |
|
||||| |
|
|
| T |
52355591 |
aaggt |
52355587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 24 - 177
Target Start/End: Complemental strand, 52357316 - 52357166
Alignment:
| Q |
24 |
gagacagggataggggatacgacagagacgaaagagagggtagcaaaggtaggtctaaatcgaaacgcgatgaagagatggagtattcagtggaaactcg |
123 |
Q |
| |
|
|||| |||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| |||| || |
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|
| T |
52357316 |
gagatagggatagggtatacgatatagacgaaagagagggtagcaaaggtaggtctaaatcgaagcgcgatgaagagagggaagattcattgga---gcg |
52357220 |
T |
|
| Q |
124 |
atactccttgcataagaggaaagatagagaacatagcgaggatagggaattgga |
177 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
52357219 |
atactcctcgcataagaggaaagacagagaacatagcgaggatcgggaattgga |
52357166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 209 - 307
Target Start/End: Complemental strand, 52356283 - 52356185
Alignment:
| Q |
209 |
aaacttggaagcctctctagtagtgatgccttagcaaaggctaagaaggctttacaaattcagaaattgttatcagagaagctgaagaaaattcctcag |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||| |
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| T |
52356283 |
aaacttggaagcctctctagtagtgatgccttagcaaaggctaagaaggctttacaaatgcagaaattgttgtcagcgaagctgaagaaaattcctcag |
52356185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 615 - 694
Target Start/End: Complemental strand, 52355198 - 52355119
Alignment:
| Q |
615 |
agagtaaatttggagaagctcaagcaaaagaacaaaaggacaaacaagcacagctagcaaaggcaaaggctgctcctgat |
694 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52355198 |
agagtaaatttggagaagctcaagcaaaagagcagaaggccaaacaagcacagctagcaaaggcaaaggctgctcctgat |
52355119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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