View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9247_low_20 (Length: 425)
Name: NF9247_low_20
Description: NF9247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9247_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 7 - 407
Target Start/End: Complemental strand, 46957975 - 46957575
Alignment:
| Q |
7 |
gaagcagagatttggcattgacccttacacctaatgcaatgagggccttggaattagacgagcagttcatgaatattgtggtttgaagtgcctaaattta |
106 |
Q |
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| T |
46957975 |
gaagcatagatttggcattgacccttacacctaatgcaatgagggccttggaattagacgagcagttcgtgaatattgtggtttgaagtgcctaaattta |
46957876 |
T |
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| Q |
107 |
tttactgctactggtttgataaatttattggcaagttttgctgataatttcagggaaggggacattatatttgccattaaaaaactcatgcaatgtgagg |
206 |
Q |
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| T |
46957875 |
tttactgttactggtttgataaatttattggcaagttttgctgataatttcagggaaggggacattatatttgccattaaaaaactcatgcaatgtgagg |
46957776 |
T |
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| Q |
207 |
tagttcttgaatataagatgaattcattgttcttatttttcatatccataagtagaggttgtgaacatgacttgattgcagcatgtagctccttaagatg |
306 |
Q |
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| T |
46957775 |
tagttcttgaatataagatgaattcattgttcttatttttcatatccataagtagaggttgtgaacatgacttgattgcagcatgtagctccgtaagatg |
46957676 |
T |
|
| Q |
307 |
tccccattttggttgcctaaccaaaccttgtgaagcatagtcaatcacatatttgttcaatatttgcaatttcactcaaatgaagaaaagaaagaaccat |
406 |
Q |
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| T |
46957675 |
tccccattttggttgcctaaccaaaccttgtgaagcatagtcaatcacatatttgttcaatatttgcaatttcactcaaatgaagaaaagaaagaaccat |
46957576 |
T |
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| Q |
407 |
a |
407 |
Q |
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| T |
46957575 |
a |
46957575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 256 - 334
Target Start/End: Complemental strand, 40101333 - 40101255
Alignment:
| Q |
256 |
aagtagaggttgtgaacatgacttgattgcagcatgtagctccttaagatgtccccattttggttgcctaaccaaacct |
334 |
Q |
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| T |
40101333 |
aagtagaggttgtgaacatgacttgattgaagcatgtagctccttaagatgtccccattttggttgtctaactaaacct |
40101255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 324
Target Start/End: Original strand, 44357795 - 44357850
Alignment:
| Q |
269 |
gaacatgacttgattgcagcatgtagctccttaagatgtccccattttggttgcct |
324 |
Q |
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| T |
44357795 |
gaacaagacttgattgcagcatgcaactccttgagatgtccccacttaggttgcct |
44357850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 17860208 - 17860123
Alignment:
| Q |
172 |
tatatttgccattaaaaaac--tcatgcaatgtgaggtagttcttgaatataagatgaattcattgttcttatttttcatatccat |
255 |
Q |
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| T |
17860208 |
tatatttgccattaaaaaaaattcatgcaatttgaggtaattcttgaatagaaaatgaattcattcttcctatttttcatatccat |
17860123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 17859269 - 17859337
Alignment:
| Q |
186 |
aaaaactcatgcaatgtgaggtagttcttgaatataagatgaattcattgttcttatttttcatatcca |
254 |
Q |
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| T |
17859269 |
aaaaactcaagcaatatgatgtagttcttgaatagaagataaattcattcttcatatttttcatatcca |
17859337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 24321874 - 24321803
Alignment:
| Q |
172 |
tatatttgccattaaaaaactcatgcaatgtgaggtagttcttgaatataagatgaattcattgttcttatt |
243 |
Q |
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| T |
24321874 |
tatatttgtcattataaaactaatgtaatgtgaggtagttcttggatagaagatgaatccattcttcatatt |
24321803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 17466622 - 17466548
Alignment:
| Q |
175 |
atttgccattaaaaaactcatgcaatgtgaggtagttcttgaatataagatgaattcattgttcttatttttcat |
249 |
Q |
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| T |
17466622 |
atttgcaataaaaaaactcatgcaatgtgaggtagttcttggatagaagataaattcagtcttcatatttttcat |
17466548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 21558194 - 21558113
Alignment:
| Q |
172 |
tatatttgccattaaaaaa--ctcatgcaatgtgaggtagttcttgaatataagatgaattcattgttcttatttttcatat |
251 |
Q |
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| T |
21558194 |
tatatttgccattaaaaaaaactcatgcaatgttagatagttcttggatagaagaggaattcattcttcttgtttttcatat |
21558113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 21488728 - 21488667
Alignment:
| Q |
194 |
atgcaatgtgaggtagttcttgaatataagatgaattcattgttcttatttttcatatccat |
255 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||| |
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| T |
21488728 |
atgcaatgtgaggtggttcttgaatagaagatgaattcattcatcatatttttcatatccat |
21488667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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