View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9247_low_23 (Length: 380)
Name: NF9247_low_23
Description: NF9247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9247_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 372
Target Start/End: Original strand, 40033413 - 40033763
Alignment:
| Q |
13 |
aatttacacattgagttcaaatttcacataaagttatacacatgatattaatgtcaaagacatacattgttatgatagtatcagttattgccaaaaataa |
112 |
Q |
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| T |
40033413 |
aatttacacattgagttcaaatttcacataaagttatacacatgatattaatgtcaaagacatacattgttatgatagtatcaattattgccaaaaataa |
40033512 |
T |
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| Q |
113 |
gttttctcaaccagctttgtgttgaagccagaaatcatggcagtatattatagggggctcagagagtggcggtgcatgcaaaaacaaagggcaattccgt |
212 |
Q |
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| T |
40033513 |
gttttctcaaccagctttgtgttgaagccagaaatcatggcagtatattatagggggctcagagagtggcggtgcatgcaaaaacaaagggcaattccgt |
40033612 |
T |
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| Q |
213 |
caaaataaagaaaaacgacgctgcaccatataaatcatgtaaccctgtttattctctcaccatttcattttctctaccggttctagggtttctgagtaac |
312 |
Q |
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| T |
40033613 |
caaaataaagaaaaacgacgctgcaccatataaatcatgtaaccctgtttattctctcaccatttcattttc---------tctagggtttctgagtaac |
40033703 |
T |
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| Q |
313 |
ttcattcaaggtaaatttctttcgcacaatttagggtacaatttcatttctatttgatgt |
372 |
Q |
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| T |
40033704 |
ttcattcaaggtaaatttctttctcacaatttagggtacaatttcgtttctatttgatgt |
40033763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 40039124 - 40039170
Alignment:
| Q |
104 |
caaaaataagttttctcaaccagctttgtgttgaagccagaaatcat |
150 |
Q |
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| T |
40039124 |
caaaaataagttttctcaaccagcttggtgttgaagccagatatcat |
40039170 |
T |
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