View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9247_low_25 (Length: 370)
Name: NF9247_low_25
Description: NF9247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9247_low_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 9 - 353
Target Start/End: Original strand, 8478526 - 8478870
Alignment:
| Q |
9 |
agcacagacacttgaaaataaatgcatgtctggtgtccgatgtgtgccagtgtcgaacaatgacaccacaccatgtgcttaaactcaatcagattcttat |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8478526 |
agcactgacacttgaaaataaatgcatgtctggtgtccgatgtgtgccagtgtcgaacaatgacaccagaccatgtgcttaaactcaatcagattcttat |
8478625 |
T |
|
| Q |
109 |
attctttcaaattatgaccggtatctatgtgttagtgtcatatccagtgtctatgtcaatacttcatagcattagacacagtaaggtattcaagttaata |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8478626 |
attctttcaaattatgaccggtatctatgtgttagtgtcatatccagtgtctatgtcagtacttcatagcattagacacagtaaggtattgaagttaata |
8478725 |
T |
|
| Q |
209 |
atggaatctttgggtcttacctaataccctgagtgccatcaaatgtgcacaatccaatttgggagcagaccttttttggctgtgcctgcatgaccaagtg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8478726 |
atggaatctttgggtcttacctaataccctgagtgccatcaaatgtgcacaacccaatttgggagcagaccttttttggctgtgcctgcatgaccaagtg |
8478825 |
T |
|
| Q |
309 |
aaaaccataagaaaattcatgctatataataatgaacaatcactc |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8478826 |
aaaaccataagaaaattcatgctatataataatgaacaatcactc |
8478870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University