View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9247_low_28 (Length: 356)
Name: NF9247_low_28
Description: NF9247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9247_low_28 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 52 - 356
Target Start/End: Original strand, 21082949 - 21083253
Alignment:
| Q |
52 |
acataaacttaatttctttacctactcaatttcaagtaacctacatgctatatttttcaattaggaatgaagattatagagtaaacaatgattataatgg |
151 |
Q |
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| T |
21082949 |
acataaactcaatttctttacctactcaatttcaagtagcctaaatgctatatttttcaattaggaatgaagattatagagtaaacaatgattattatgg |
21083048 |
T |
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| Q |
152 |
tggtccaatgcaagcaacaaaaatccaaaactttatttcaaaaggattttcatatagtacatcatgtcctttctttcttttcacacccgcacacgtatat |
251 |
Q |
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| T |
21083049 |
tggtccaatgcaagcaacaaaaatccaaaactttatttcaaaaggattttcatatagtacatcatgtcctttctttcttttcacacccgcacacgtatat |
21083148 |
T |
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| Q |
252 |
atagatttagaaaagcatctgaatcaatttatttcaacatgaaatatattggacccaaacaatagcatcagaccaacacacacaaatacaacaaaaacat |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
21083149 |
atagatttagaaaagcatctgaatcaatttatttcaacatgaaatatattggacccaaacaatagcatcacatcaacacacacaaatacaacaaaaacat |
21083248 |
T |
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| Q |
352 |
tccaa |
356 |
Q |
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| T |
21083249 |
tccaa |
21083253 |
T |
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