View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9247_low_3 (Length: 663)
Name: NF9247_low_3
Description: NF9247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9247_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 27 - 645
Target Start/End: Complemental strand, 6370837 - 6370219
Alignment:
| Q |
27 |
taaacaacaatatactaaagctcaagatagaatttaaacttttgtcaaaaccataacaattagcattcaataatgtagttttaacatcaaaaatctagta |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6370837 |
taaacaacaatatactaaagctcaagatagaatttaaacttttgttaaaaccataacaattagcattcaataatgtggttttaacatcaaaaatctagta |
6370738 |
T |
|
| Q |
127 |
tcatatttcgacatcatataaaaatacaccatttataatagctaatgtgacttttcagtcaatctctctgatttcttgcttcgcaaaattcacggtggat |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
6370737 |
acatatttcgacatcatataaaaatacaccatttataatagttaatgtgacttttcagtccatctctctgattttttgcttcgcaaaattcacaatggat |
6370638 |
T |
|
| Q |
227 |
ttgtttgaagttgcctaaaaatgcgag--tgattagtgtgtaccgtgttaccaaacacaaccttaatgtatttagagagtgaaaatctaaaccttgattc |
324 |
Q |
| |
|
||||||||||||||||||| | || || | |||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6370637 |
ttgtttgaagttgcctaaacacgcaagaataattagtgt--accgtgttaccaaatataaccttaatgtatttagagagtgaaaatctaaaacttgattc |
6370540 |
T |
|
| Q |
325 |
ctactcccatttgcacttaatcttatgagtatgcctaaaatcatatctcaaaaccaactttccatccaatgtcctaagacaaaaactttcaaccaaaaca |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6370539 |
ctactcccatttgcacttaatcttatgagtatgcctaaaatcatatctcaaaaccaactttccatccaatgtcctaagacaaaaactttcaaccaacaca |
6370440 |
T |
|
| Q |
425 |
taacaaccaaacctattccattcattttgacatgttacctcttctttcactgttacaaccctctctctcccattaccataaacccaaccaccttgctctt |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6370439 |
taacaaccaaacctattccattcattttgacatgttacctcttctttcactgttacaaccctctctctcccattaccataaacccaaccaccttgctctt |
6370340 |
T |
|
| Q |
525 |
caacccatctcatattctcaataattgctgaactcaatccaacactaacccttctcttattataaggattataaaccctaaacaacataaaaccattatt |
624 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6370339 |
caacccatctcatattctcaataattgctgaactcaatccaacactaacccttctcttattataaggattataaaccctaaacaacataaaaccattatt |
6370240 |
T |
|
| Q |
625 |
atcaattgttccattctttgt |
645 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
6370239 |
atcaattgttccattctttgt |
6370219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University