View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9247_low_30 (Length: 335)
Name: NF9247_low_30
Description: NF9247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9247_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 22626168 - 22626470
Alignment:
| Q |
9 |
tggtgttcttgaatattatggttattttgaaggcgttgttaccagtaataataatattattcgggttcaaattttcaaacctggtgtagataagagctat |
108 |
Q |
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| T |
22626168 |
tggtgttcttgaatactatggttattttgaaggcgttgttaccagtaat---aatattatccaggttcaaattttcaaacctggtgtagataagagctat |
22626264 |
T |
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| Q |
109 |
gctggaaattttaagaaactgaattcatcgaatgtcgtgaatcctgttgacggttatgttaagggtccagctatgtatttcgctacagatgatctggttt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22626265 |
gctggaaattttaagaaactgaattcatcgaatgtcatgaatcctgttgacggttatgttaagggtccagctatgtatttcgctacagatgatctggttg |
22626364 |
T |
|
| Q |
209 |
tagcacccttgactccaatctcagctttgggtttacttaaccgtttgaatactcatcttaatgacttgaaggaaaaagttatcacaattggcatcaagga |
308 |
Q |
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| T |
22626365 |
tagcacccttaactccaatctcagctttgggtttacttaaccgtttgaatactcctcttaatgaattgaaggaaaaagttatcacaattggcatcaagga |
22626464 |
T |
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| Q |
309 |
ggtaaa |
314 |
Q |
| |
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|||||| |
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| T |
22626465 |
ggtaaa |
22626470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 57 - 318
Target Start/End: Complemental strand, 22632969 - 22632702
Alignment:
| Q |
57 |
taataatattattcgggttcaaattttcaaacctggtgtagataagagc---tatgctggaaattttaagaaactgaattcatcgaatgtcgtgaatcct |
153 |
Q |
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| T |
22632969 |
taatagtattattcatgttcaaattttcaaaactgatgtagataagaccatttgtgctggaagtattacggaactgaatttacgttatggggtgaatcct |
22632870 |
T |
|
| Q |
154 |
gttgacggttatgttaagggtccagctatgtatttcgctacagatgatctggttt---tagcacccttgactccaatctcagctttgggtttacttaacc |
250 |
Q |
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| ||| | |||||| |||||||||||||||||||| |||||||||||| ||||| ||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
22632869 |
ggtgaggattatgtcaagggtccagctatgtattttgctacagatgatttggttaatgtagcaccattgactccaatttcagctttgggtttacttaacc |
22632770 |
T |
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| Q |
251 |
gtttgaatactcatcttaatgacttgaaggaaaaagttatcacaattggcatcaaggaggtaaaccat |
318 |
Q |
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| T |
22632769 |
gactgaaaactcctcttaatgatttgaaggaaaaagttgtcaccattggcaccaaggaggtaaaccat |
22632702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 160 - 313
Target Start/End: Original strand, 23366875 - 23367028
Alignment:
| Q |
160 |
ggttatgttaagggtccagctatgtatttcgctacagatgatctggttttagcacccttgactccaatctcagctttgggtttacttaaccgtttgaata |
259 |
Q |
| |
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| T |
23366875 |
ggttatgtcaagggtccagctatgtatgttgctactgatgatttggccatagcacccttgtctccaatttctgcattaggtttacttaaccgattgaaaa |
23366974 |
T |
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| Q |
260 |
ctcatcttaatgacttgaaggaaaaagttatcacaattggcatcaaggaggtaa |
313 |
Q |
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||| |||||| || ||||||||||| | |||| |||||| |||||||||||| |
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| T |
23366975 |
ctcctcttaaggatttgaaggaaaagcatgtcaccattggcgtcaaggaggtaa |
23367028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 9164563 - 9164515
Alignment:
| Q |
265 |
cttaatgacttgaaggaaaaagttatcacaattggcatcaaggaggtaa |
313 |
Q |
| |
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|||||||||||||| ||||| |||||||| ||||||||||||||||||| |
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| T |
9164563 |
cttaatgacttgaaagaaaaggttatcactattggcatcaaggaggtaa |
9164515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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