View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9247_low_34 (Length: 297)
Name: NF9247_low_34
Description: NF9247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9247_low_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 38453096 - 38452834
Alignment:
| Q |
19 |
tttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgt |
118 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38453096 |
tttataacgaagaagatctcaatcatatgatgttagagtatgatcatatgtgtcacttttcacgaaagcctgcatggttgagggtcttcctcttccctgt |
38452997 |
T |
|
| Q |
119 |
ccctgttaacaacaacaaggcatcttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctcctcct |
218 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38452996 |
ccttgttaacaacaacaaggcatcttttgattctttaacttccgtcgactcgctcaattccgttcaagtttctccttttgaagaatattcatctcctcct |
38452897 |
T |
|
| Q |
219 |
actacgcctccacctccgttcatggcgactaaggacacggttacaaaagctgagatgaagaaa |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38452896 |
actacgcctccacctccgttcatggcgactaaggacacggttacaaaagctgagatgaagaaa |
38452834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 38182786 - 38182524
Alignment:
| Q |
19 |
tttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgt |
118 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||| |||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||| || |
|
|
| T |
38182786 |
tttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggt |
38182687 |
T |
|
| Q |
119 |
ccctgttaacaacaacaaggcatcttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctcctcct |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38182686 |
ccctattaacaacaacaaggcatcttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctcctcct |
38182587 |
T |
|
| Q |
219 |
actacgcctccacctccgttcatggcgactaaggacacggttacaaaagctgagatgaagaaa |
281 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38182586 |
actacgcctccacatccgttcatggcgactaaggacacggttacaaaagctgagatgaagaaa |
38182524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 38188345 - 38188607
Alignment:
| Q |
19 |
tttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgt |
118 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||| |||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||| || |
|
|
| T |
38188345 |
tttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggt |
38188444 |
T |
|
| Q |
119 |
ccctgttaacaacaacaaggcatcttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctcctcct |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38188445 |
ccctattaacaacaacaaggcatcttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctcctcct |
38188544 |
T |
|
| Q |
219 |
actacgcctccacctccgttcatggcgactaaggacacggttacaaaagctgagatgaagaaa |
281 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38188545 |
actacgcctccacatccgttcatggcgactaaggacacggttacaaaagctgagatgaagaaa |
38188607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 38210012 - 38209750
Alignment:
| Q |
19 |
tttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgt |
118 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||| |||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||| || |
|
|
| T |
38210012 |
tttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggt |
38209913 |
T |
|
| Q |
119 |
ccctgttaacaacaacaaggcatcttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctcctcct |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38209912 |
ccctattaacaacaacaaggcatcttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctcctcct |
38209813 |
T |
|
| Q |
219 |
actacgcctccacctccgttcatggcgactaaggacacggttacaaaagctgagatgaagaaa |
281 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38209812 |
actacgcctccacatccgttcatggcgactaaggacacggttacaaaagctgagatgaagaaa |
38209750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 38185603 - 38185865
Alignment:
| Q |
19 |
tttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgt |
118 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||| |||||||||| |||||||| ||||| || |||||||||||||||||| |||||||||||||| || |
|
|
| T |
38185603 |
tttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagagtcttcctcttcccggt |
38185702 |
T |
|
| Q |
119 |
ccctgttaacaacaacaaggcatcttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctcctcct |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38185703 |
ccctattaacaacaacaaggcatcttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctcctcct |
38185802 |
T |
|
| Q |
219 |
actacgcctccacctccgttcatggcgactaaggacacggttacaaaagctgagatgaagaaa |
281 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38185803 |
actacgcctccacatccgttcatggcgactaaggacacggttacaaaagctgagatgaagaaa |
38185865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 38212754 - 38212492
Alignment:
| Q |
19 |
tttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgt |
118 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||| |||||||||| |||||||| ||||| || |||||||||||||||||| |||||||||||||| || |
|
|
| T |
38212754 |
tttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagagtcttcctcttcccggt |
38212655 |
T |
|
| Q |
119 |
ccctgttaacaacaacaaggcatcttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctcctcct |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38212654 |
ccctattaacaacaacaaggcatcttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctcctcct |
38212555 |
T |
|
| Q |
219 |
actacgcctccacctccgttcatggcgactaaggacacggttacaaaagctgagatgaagaaa |
281 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38212554 |
actacgcctccacatccgttcatggcgactaaggacacggttacaaaagctgagatgaagaaa |
38212492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 38215570 - 38215832
Alignment:
| Q |
19 |
tttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgt |
118 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||| |||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||| || |
|
|
| T |
38215570 |
tttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggt |
38215669 |
T |
|
| Q |
119 |
ccctgttaacaacaacaaggcatcttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctcctcct |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38215670 |
ccctattaacaacaacaaggcatcttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctcctcct |
38215769 |
T |
|
| Q |
219 |
actacgcctccacctccgttcatggcgactaaggacacggttacaaaagctgagatgaagaaa |
281 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38215770 |
actacgcctccacatccgttcatggcgagtaaggacacggttacaaaagctgagatgaagaaa |
38215832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 38169813 - 38170076
Alignment:
| Q |
18 |
atttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctg |
117 |
Q |
| |
|
|||||||||||| ||||||| ||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
38169813 |
atttataacgaagaagatctcaatcatattatgttcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttcccgg |
38169912 |
T |
|
| Q |
118 |
tccctgttaacaacaacaaggcatcttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctcctcc |
217 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| | | |||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38169913 |
tccctattaacaacaacaaggcatcttttgattctttggcttccgtcaaatcgctcaatttcgttcgagtttctccttttgaagaatattcatctcctcc |
38170012 |
T |
|
| Q |
218 |
tactacgcctccacctccgttcatggcgactaaggacacggttacaaaagctgagatgaagaaa |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38170013 |
tactacgcctccacctccgttcatggcgactaaggacacggttacaaaagctgagatgaagaaa |
38170076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 40 - 281
Target Start/End: Original strand, 38219953 - 38220194
Alignment:
| Q |
40 |
atcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggc |
139 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
38219953 |
atcatatgatgttcgagtatgatcgtatgtgtcgcttttcacgaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggc |
38220052 |
T |
|
| Q |
140 |
atcttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctcctcctactacgcctccacctccgttc |
239 |
Q |
| |
|
|||||||||||||||||||||| | | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38220053 |
atcttttgattctttggcttccatcaaatcgctcaattccgttcaagtctctccttttgaagaatattcatctcctcctactacgcctccacctccgtcc |
38220152 |
T |
|
| Q |
240 |
atggcgactaaggacacggttacaaaagctgagatgaagaaa |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38220153 |
atggcgactaaggacacggttacaaaagctgagatgaagaaa |
38220194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 38443399 - 38443540
Alignment:
| Q |
19 |
tttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgt |
118 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38443399 |
tttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggttgagggtcttcctcttccctgt |
38443498 |
T |
|
| Q |
119 |
ccctgttaacaacaacaaggcatcttttgattctttggcttc |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38443499 |
ccctgttaacaacaacaaggcatcttttgattctttggcttc |
38443540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 38155885 - 38156027
Alignment:
| Q |
19 |
tttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgt |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||| | |||| | | ||| ||||| ||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
38155885 |
tttataacgaagaagatcttgatcatatgatgttcgagaacgatcgtttatgttgcttttcacgaaagcctgcaaagttgagggtcttcctcttccctct |
38155984 |
T |
|
| Q |
119 |
ccctgttaacaacaacaaggcatcttttgattctttggcttcc |
161 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
38155985 |
ccctattagcaacaacaaggcatcttttaattctttggcttcc |
38156027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 38443570 - 38443637
Alignment:
| Q |
166 |
actcgctcaattccgttcaagtttctccttttgaagaatattcatctcctcctactacgcctccacctccg |
236 |
Q |
| |
|
||||||||||||||||||| ||| |||| || |||| ||| |||||||| |||||| |||||||||||| |
|
|
| T |
38443570 |
actcgctcaattccgttcatgttcctcc---tgtagaagatttatctcctcttactacacctccacctccg |
38443637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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