View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9247_low_37 (Length: 292)
Name: NF9247_low_37
Description: NF9247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9247_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 12951227 - 12950997
Alignment:
| Q |
18 |
cttccttcagtaatagccaacagaaaactttgatctccatttaaaacatttttcatgaagcttactgaagtagggtcccagagcctgcaagatgacaaat |
117 |
Q |
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| T |
12951227 |
cttccttcagtaatagctaacagagaactttgatctccatttaaaacattttgcatgaagcttactgaagtagggtcccagagcctgcaagatgacaaat |
12951128 |
T |
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| Q |
118 |
taactaagaagaatgaaggagtccgggtataactaagaagaatgcgttcattcttcaatcttttctttggtgctttgagatcgccactcctaaaacacaa |
217 |
Q |
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| T |
12951127 |
taactaagaagaatgaaggagtccgggtataactaagaagaatgcgttcatgcttcaatcttttctttggtgctttgagatcgccactcctaaaacacaa |
12951028 |
T |
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| Q |
218 |
caacaccaatattggattctttaaattggat |
248 |
Q |
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| T |
12951027 |
caacaccaacattggattttttaaattggat |
12950997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 12889676 - 12889558
Alignment:
| Q |
18 |
cttccttcagtaatagccaacagaaaactttgatctccatttaaaacatttttcatgaagcttactgaagtagggtcccagagcctgcaagatgacaaat |
117 |
Q |
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||||||||||||||||| |||||| ||||| |||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12889676 |
cttccttcagtaatagctaacagagaacttcgatctccatttacaacattttgcacaaagcttactgaagtagggtcccagagcctgcaagatgacaaat |
12889577 |
T |
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| Q |
118 |
taactaagaagaatgaagg |
136 |
Q |
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| T |
12889576 |
taactaagaagaataaagg |
12889558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 165 - 277
Target Start/End: Original strand, 14401907 - 14402019
Alignment:
| Q |
165 |
tcattcttcaatcttttctttggtgctttgagatcgccactcctaaaacacaacaacaccaatattggattctttaaattggatctttgtataacaacgg |
264 |
Q |
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|||| ||||||||||||||| |||| ||| || |||||||||| |||||||||| |||||||||||||| ||| || ||||| | |||||||| | |
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| T |
14401907 |
tcatgcttcaatcttttcttgggtgatttatgagcgccactcctttcacacaacaactccaatattggattccttatatcggatcatcaaataacaactg |
14402006 |
T |
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| Q |
265 |
taaatccgaccct |
277 |
Q |
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|||||||| |||| |
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| T |
14402007 |
taaatccggccct |
14402019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 277
Target Start/End: Complemental strand, 30937910 - 30937797
Alignment:
| Q |
164 |
ttcattcttcaatcttttctttggtgctttgagatcgccactcctaaaacacaacaacaccaatattggattctttaaattggatctttgtataacaacg |
263 |
Q |
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||||| ||||||||||||||| | | ||||| |||| |||||||| ||||| |||| |||| |||||||||| || ||||||||| |||| |||| |
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| T |
30937910 |
ttcatgcttcaatcttttcttggatactttgtgatcaccactcctttcacacatcaactccaacattggattctgtatgctggatctttttataccaact |
30937811 |
T |
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| Q |
264 |
gtaaatccgaccct |
277 |
Q |
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||||||||| |||| |
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| T |
30937810 |
gtaaatccggccct |
30937797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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