View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9247_low_4 (Length: 645)

Name: NF9247_low_4
Description: NF9247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9247_low_4
NF9247_low_4
[»] chr2 (4 HSPs)
chr2 (18-410)||(16752650-16753042)
chr2 (18-410)||(16757154-16757545)
chr2 (476-636)||(16752424-16752584)
chr2 (486-636)||(16756929-16757079)
[»] chr5 (14 HSPs)
chr5 (486-636)||(32740033-32740183)
chr5 (166-406)||(28475032-28475264)
chr5 (506-636)||(32762943-32763073)
chr5 (486-636)||(32767843-32767993)
chr5 (506-636)||(28474803-28474933)
chr5 (486-630)||(32651818-32651962)
chr5 (166-400)||(32763168-32763399)
chr5 (486-623)||(32656073-32656210)
chr5 (509-624)||(25469530-25469645)
chr5 (289-410)||(32557680-32557798)
chr5 (257-351)||(32740317-32740410)
chr5 (88-216)||(25477766-25477894)
chr5 (166-216)||(25469807-25469857)
chr5 (166-216)||(32858861-32858911)
[»] chr7 (4 HSPs)
chr7 (506-631)||(7969919-7970044)
chr7 (508-631)||(37577067-37577190)
chr7 (286-410)||(37577275-37577403)
chr7 (286-401)||(7969711-7969818)
[»] chr1 (4 HSPs)
chr1 (506-628)||(17583451-17583573)
chr1 (506-630)||(17591356-17591480)
chr1 (255-341)||(17583721-17583806)
chr1 (286-341)||(17591629-17591684)


Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 16753042 - 16752650
Alignment:
Q  18 aatggtatggcgtaatctagtccccaaggaggcggatgagaacgtggatggtagactcattatgaatgcagtaatcggcaacagtccggctgtcatctag 117  Q
    |||||| ||||||||||||||||||||||||||||| |   | ||||| ||| || || || ||||||  || ||||||||| |||  |||||||| |||    
T  16753042 aatggtgtggcgtaatctagtccccaaggaggcggagggtgaggtggagggttgagtctttttgaatgttgttatcggcaacggtcatgctgtcatgtag 16752943  T
Q  118 ttgcttgccgccaaagatcaatcgttggtcctgcactgggtatgtttgcttgtcaagaatctgctccttcacactgaatatcgtgtctaaactcttaact 217  Q
    |||| | |  | |||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16752942 ttgcctacaacaaaaggtcaatcgttggtcctgcactgggtatgttttcttgtcatgaatctgctccttcacactgaatatcgtgtctaaactcttaact 16752843  T
Q  218 ttcaaagtgataatctttccattcaagtcatgtacgaagatttgcatctgcaccacaattgacattagatcaataaaagaaaatttgagactgatatttc 317  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16752842 ttcaaagtgataatctttccattcaagtcccttacgaagatttgcatctgcaccacaattgacattaaatcaataaaagaaaatttgagactgatatttc 16752743  T
Q  318 aagaactggtctaaaaatagaaaaatagaaaacactagcaaccttagttttggcatgtgaaaaaccgaagaatttgagataaattgctagagt 410  Q
    |||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16752742 aagagctggtctaaaattagaaaaatagaaaacactaacaaccttagttttggcatgtgaaaaaccgaagaatttgagataaattgctagagt 16752650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 16757545 - 16757154
Alignment:
Q  18 aatggtatggcgtaatctagtccccaaggaggcggatgagaacgtggatggtagactcattatgaatgcagtaatcggcaacagtccggctgtcatctag 117  Q
    |||||||||||||||||||||||||||||| ||||| |  ||||| |||||| |||||||| ||||||  ||||||||||||||||||||||||||||||    
T  16757545 aatggtatggcgtaatctagtccccaaggatgcggaaggcaacgtcgatggttgactcattttgaatgttgtaatcggcaacagtccggctgtcatctag 16757446  T
Q  118 ttgcttgccgccaaagatcaatcgttggtcctgcactgggtatgtttgcttgtcaagaatctgctccttcacactgaatatcgtgtctaaactcttaact 217  Q
    |||||||||| |||||||||||||||||  |||||  | |||   |  ||  |||||||||| ||| ||||||||| |||||||||||||||| |||||     
T  16757445 ttgcttgccggcaaagatcaatcgttggctctgcatcgagtactctgtctcatcaagaatcttctctttcacactgcatatcgtgtctaaactattaacc 16757346  T
Q  218 ttcaaagtgataatctttccattcaagtcatgtacgaagatttgcatctgcaccacaattgacattagatcaataaaagaaaatttgagactgatatttc 317  Q
    | |||||||||  ||| |||| |||    || |||||||||| |||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||    
T  16757345 tccaaagtgattgtctctccagtcagtaaatttacgaagattcgcatctgcaccacagttgacattaaatcaataaaagaaaaattgagactgatatttc 16757246  T
Q  318 aagaactggtctaaaaatagaaaaatagaaaacactagcaaccttagttttggcatgtgaaaaaccgaagaatttgagataaattgctagagt 410  Q
    ||||||||||| |||| ||||||| ||| | |||||| ||| ||||||||| ||||| ||||||  || |||||||| |||||||||||||||    
T  16757245 aagaactggtccaaaattagaaaattagtagacactaacaatcttagtttt-gcatgcgaaaaaatgatgaatttgaaataaattgctagagt 16757154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 476 - 636
Target Start/End: Complemental strand, 16752584 - 16752424
Alignment:
Q  476 gagatagtcagtaccatggggtttgtgcaagttatgcaaatttctagcttgagaggtttggaagaaccatttggaatcataaggaactctggtgaaagag 575  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16752584 gagatagtcagtaccacggggtttgtgcaagttatgcaaatttctagcttgagaggtttggaagaaccatttggaatcataaggaactctggtgaaagag 16752485  T
Q  576 ttcctaaagtaacctgttggacattcgttacaaaagagtgtaatttcagtttgcatctctg 636  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16752484 ttcctaaagtaacctgttggacattcgttacaaaagagtgtaatttcagtttgcatctctg 16752424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 486 - 636
Target Start/End: Complemental strand, 16757079 - 16756929
Alignment:
Q  486 gtaccatggggtttgtgcaagttatgcaaatttctagcttgagaggtttggaagaaccatttggaatcataaggaactctggtgaaagagttcctaaagt 585  Q
    ||||| ||||| |||||  ||||||||||||| | |||| ||||||||  ||||||||| ||||||||| ||||||||||| |||||||||| |||||||    
T  16757079 gtaccgtgggggttgtgggagttatgcaaattacaagctcgagaggttcagaagaaccaattggaatcacaaggaactctgatgaaagagttgctaaagt 16756980  T
Q  586 aacctgttggacattcgttacaaaagagtgtaatttcagtttgcatctctg 636  Q
    ||| || || | |||| || |||| ||||||||||||||||||||| ||||    
T  16756979 aacttgatgcaaattctttgcaaacgagtgtaatttcagtttgcatttctg 16756929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 486 - 636
Target Start/End: Complemental strand, 32740183 - 32740033
Alignment:
Q  486 gtaccatggggtttgtgcaagttatgcaaatttctagcttgagaggtttggaagaaccatttggaatcataaggaactctggtgaaagagttcctaaagt 585  Q
    ||||||||||| ||| |||||||||||||||||||| |||||||||||  ||||||| |  |||||||| |||||||| || ||||||| || |||||||    
T  32740183 gtaccatgggggttgcgcaagttatgcaaatttctaacttgagaggttcagaagaactaaatggaatcacaaggaactttgatgaaagatttgctaaagt 32740084  T
Q  586 aacctgttggacattcgttacaaaagagtgtaatttcagtttgcatctctg 636  Q
    || ||||||||||||| |  |||||||||||||||||||||| ||| ||||    
T  32740083 aatctgttggacattcttggcaaaagagtgtaatttcagtttacatatctg 32740033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 166 - 406
Target Start/End: Complemental strand, 28475264 - 28475032
Alignment:
Q  166 cttgtcaagaatctgctccttcacactgaatatcgtgtctaaactcttaactttcaaagtgataatctttccattcaagtcatgtacgaagatttgcatc 265  Q
    |||||||||||||| || |||||||  || |||||||||| |||||| |||  |||  |  ||  |||||||| |||  || |  ||| |||||||||||    
T  28475264 cttgtcaagaatcttcttcttcacatcgactatcgtgtctgaactctcaaccctcaggggaattgtctttccaatcagatcttccacgtagatttgcatc 28475165  T
Q  266 tgcaccacaattgacattagatcaataaaagaaaatttgagactgatatttcaagaactggtctaaaaatagaaaaatagaaaacactagcaaccttagt 365  Q
    |||||||||| |  ||||| |||| ||||||||||||||||||||| ||||||||||||  || ||||||||        ||||||||| ||||||||||    
T  28475164 tgcaccacaaataccattaaatcagtaaaagaaaatttgagactgacatttcaagaactaatccaaaaatag--------aaaacactaacaaccttagt 28475073  T
Q  366 tttggcatgtgaaaaaccgaagaatttgagataaattgcta 406  Q
    |||||||| | |||||| || |||||||||||||| |||||    
T  28475072 tttggcatttcaaaaactgatgaatttgagataaaatgcta 28475032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 506 - 636
Target Start/End: Complemental strand, 32763073 - 32762943
Alignment:
Q  506 gttatgcaaatttctagcttgagaggtttggaagaaccatttggaatcataaggaactctggtgaaagagttcctaaagtaacctgttggacattcgtta 605  Q
    ||||||||||| |||||||||||||||| ||||||| ||  |||||||| ||| ||||||| |||||||||| |||||| |||  ||||||| ||| | |    
T  32763073 gttatgcaaatatctagcttgagaggttcggaagaagcaaatggaatcacaagaaactctgatgaaagagttgctaaagcaacacgttggacgttcttca 32762974  T
Q  606 caaaagagtgtaatttcagtttgcatctctg 636  Q
    ||||||| |||||||||||||||||| ||||    
T  32762973 caaaagactgtaatttcagtttgcatatctg 32762943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 486 - 636
Target Start/End: Complemental strand, 32767993 - 32767843
Alignment:
Q  486 gtaccatggggtttgtgcaagttatgcaaatttctagcttgagaggtttggaagaaccatttggaatcataaggaactctggtgaaagagttcctaaagt 585  Q
    ||||||||||| || || ||| ||||||||||||||||||||| ||||  ||||| |||  |||||||| ||||| ||||| || ||||||| |||||||    
T  32767993 gtaccatgggggttatgtaagatatgcaaatttctagcttgagtggttcagaagagccaactggaatcacaaggagctctgatggaagagttgctaaagt 32767894  T
Q  586 aacctgttggacattcgttacaaaagagtgtaatttcagtttgcatctctg 636  Q
    || ||| ||||||||  | |||||||| |||||||||||||||||| ||||    
T  32767893 aaactgctggacatttttcacaaaagactgtaatttcagtttgcatgtctg 32767843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 506 - 636
Target Start/End: Complemental strand, 28474933 - 28474803
Alignment:
Q  506 gttatgcaaatttctagcttgagaggtttggaagaaccatttggaatcataaggaactctggtgaaagagttcctaaagtaacctgttggacattcgtta 605  Q
    ||||| ||||| |||||||||||||||| ||||||||||  |||||||| ||| ||||||| |||| ||||| |||||| ||||| |||||| ||| | |    
T  28474933 gttatacaaatatctagcttgagaggttcggaagaaccaaatggaatcacaagcaactctgatgaaggagttgctaaagcaacctcttggacgttcttca 28474834  T
Q  606 caaaagagtgtaatttcagtttgcatctctg 636  Q
    ||||||| |||||  ||||||||||| ||||    
T  28474833 caaaagactgtaaagtcagtttgcatatctg 28474803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 486 - 630
Target Start/End: Original strand, 32651818 - 32651962
Alignment:
Q  486 gtaccatggggtttgtgcaagttatgcaaatttctagcttgagaggtttggaagaaccatttggaatcataaggaactctggtgaaagagttcctaaagt 585  Q
    ||||||||||| || || | | |||||||||||||||||| |||||||  |||||||||  |||||||| ||||||||||| ||||||| || || ||||    
T  32651818 gtaccatgggggttatggatgctatgcaaatttctagcttcagaggttcagaagaaccaaatggaatcacaaggaactctgatgaaagatttgctgaagt 32651917  T
Q  586 aacctgttggacattcgttacaaaagagtgtaatttcagtttgca 630  Q
    |||  |||||| || | |  ||||||| |||||||||||||||||    
T  32651918 aacacgttggaaatccttaccaaaagactgtaatttcagtttgca 32651962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 166 - 400
Target Start/End: Complemental strand, 32763399 - 32763168
Alignment:
Q  166 cttgtcaagaatctgctccttcacactgaatatcgtgtctaaactcttaactttcaaagtgataatctttccattcaagtcatgtacgaagatttgcatc 265  Q
    ||||||||||||||  | ||||||| |   ||| |||||| |||||| |||  |||| | ||| ||||||||| ||| ||| | |||| |||||||||||    
T  32763399 cttgtcaagaatctttttcttcacattttctattgtgtctgaactctcaaccctcaaggggatcatctttccagtcaggtcttttacgtagatttgcatc 32763300  T
Q  266 tgcaccacaattgacattagatcaataaaagaaaatttgagact------gatatttcaagaactggtctaaaaatagaaaaatagaaaacactagcaac 359  Q
    |||||||||| |  ||||| ||||||||| ||||||||||||||       |||||||||||||||        ||  ||||||||||||||||| ||||    
T  32763299 tgcaccacaaataccattaaatcaataaaggaaaatttgagactcatatatatatttcaagaactg--------atccaaaaatagaaaacactaacaac 32763208  T
Q  360 cttagttttggcatgtgaaaaaccgaagaatttgagataaa 400  Q
    |||||||||| ||| ||||| || || ||||||||||||||    
T  32763207 cttagttttgacat-tgaaacactgatgaatttgagataaa 32763168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 486 - 623
Target Start/End: Original strand, 32656073 - 32656210
Alignment:
Q  486 gtaccatggggtttgtgcaagttatgcaaatttctagcttgagaggtttggaagaaccatttggaatcataaggaactctggtgaaagagttcctaaagt 585  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||   ||||||||  |||||||| ||| ||||| |  ||||||||| ||||       
T  32656073 gtaccatggggtttatgcaagttatgcaaatttctagcttgagagcttcaaaagaaccaaatggaatcacaagcaactccgacgaaagagttgctaatac 32656172  T
Q  586 aacctgttggacattcgttacaaaagagtgtaatttca 623  Q
    ||||  |||||||||| |  | ||||| ||||||||||    
T  32656173 aaccgattggacattcttcgcgaaagactgtaatttca 32656210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 509 - 624
Target Start/End: Complemental strand, 25469645 - 25469530
Alignment:
Q  509 atgcaaatttctagcttgagaggtttggaagaaccatttggaatcataaggaactctggtgaaagagttcctaaagtaacctgttggacattcgttacaa 608  Q
    ||||||||||||| || ||||||||  ||| |||||  |||||||| |||||||| || ||||||||||   ||||||||| ||||||||||| |  |||    
T  25469645 atgcaaatttctatctcgagaggttcagaaaaaccaaatggaatcacaaggaactttgatgaaagagttttcaaagtaacccgttggacattcttcgcaa 25469546  T
Q  609 aagagtgtaatttcag 624  Q
    ||| ||| ||||||||    
T  25469545 aagtgtgaaatttcag 25469530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 410
Target Start/End: Original strand, 32557680 - 32557798
Alignment:
Q  289 aataaaagaaaatttgagactgatatttcaagaactggtctaaaaatagaaaaatagaaaacactagcaaccttagttttggcatgtgaaaaaccgaaga 388  Q
    ||||||||||||||| |   ||||||||| ||||||| || |||| | ||||||  |||||||||| ||| | |  ||||||||| |||||||| || ||    
T  32557680 aataaaagaaaatttaattttgatatttccagaactgatccaaaatt-gaaaaacggaaaacactaacaatcct--ttttggcatttgaaaaactgatga 32557776  T
Q  389 atttgagataaattgctagagt 410  Q
    |||||||||||| |||||||||    
T  32557777 atttgagataaaatgctagagt 32557798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 32740410 - 32740317
Alignment:
Q  257 atttgcatctgcaccacaattgacattagatcaataaaagaaaatttgagactgatatttcaagaactggtctaaaaatagaaaaatagaaaaca 351  Q
    |||||||||||||||||||||| || || | | ||| || ||||||| |||||||||||| | ||| || || || |||||||||||||||||||    
T  32740410 atttgcatctgcaccacaattgccaataaaacgatacaacaaaattttagactgatatttaaggaattgatc-aacaatagaaaaatagaaaaca 32740317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 25477894 - 25477766
Alignment:
Q  88 gtaatcggcaacagtccggctgtcatctagttgcttgccgccaaagatcaatcgttggtcctgcactgggtatgtttgcttgtcaagaatctgctccttc 187  Q
    ||||| |||||  ||| ||| ||| ||||||||||| |||  ||| ||||  ||||| || | |||| ||||  ||| |||||||| ||||| |||||||    
T  25477894 gtaattggcaatggtctggcagtcgtctagttgcttaccggaaaatatcagacgttgatcgttcacttggtacttttccttgtcaaaaatcttctccttc 25477795  T
Q  188 acactgaatatcgtgtctaaactcttaac 216  Q
    ||||||  |||||||||| ||||||||||    
T  25477794 acactgtctatcgtgtctgaactcttaac 25477766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 25469857 - 25469807
Alignment:
Q  166 cttgtcaagaatctgctccttcacactgaatatcgtgtctaaactcttaac 216  Q
    ||||| || ||||| ||||||||||||| ||||||||||| ||||||||||    
T  25469857 cttgttaaaaatcttctccttcacactgtatatcgtgtctgaactcttaac 25469807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 32858911 - 32858861
Alignment:
Q  166 cttgtcaagaatctgctccttcacactgaatatcgtgtctaaactcttaac 216  Q
    |||||||||||||  |||||||||| ||| |||||||||| ||||||||||    
T  32858911 cttgtcaagaatcatctccttcacattgactatcgtgtctgaactcttaac 32858861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 506 - 631
Target Start/End: Original strand, 7969919 - 7970044
Alignment:
Q  506 gttatgcaaatttctagcttgagaggtttggaagaaccatttggaatcataaggaactctggtgaaagagttcctaaagtaacctgttggacattcgtta 605  Q
    ||||||||||| ||||||||||||||||  ||||||| |  |||||||| ||||||||||| |||||||||| ||||||||| ||||||||| ||| |      
T  7969919 gttatgcaaatgtctagcttgagaggttcagaagaacgaaatggaatcacaaggaactctgatgaaagagttgctaaagtaaactgttggacgttcttcg 7970018  T
Q  606 caaaagagtgtaatttcagtttgcat 631  Q
    ||||||| ||||||||||||||||||    
T  7970019 caaaagactgtaatttcagtttgcat 7970044  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 508 - 631
Target Start/End: Complemental strand, 37577190 - 37577067
Alignment:
Q  508 tatgcaaatttctagcttgagaggtttggaagaaccatttggaatcataaggaactctggtgaaagagttcctaaagtaacctgttggacattcgttaca 607  Q
    ||||||||||||||||| ||||||||  |||||||||  |||||||| ||||||||||  ||||||||||  |||||||| | |||| |||||| |  ||    
T  37577190 tatgcaaatttctagctcgagaggttcagaagaaccaaatggaatcacaaggaactctaatgaaagagttgataaagtaaaccgttgcacattcttcgca 37577091  T
Q  608 aaagagtgtaatttcagtttgcat 631  Q
    || || || |||||| ||||||||    
T  37577090 aacgactgaaatttcggtttgcat 37577067  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 286 - 410
Target Start/End: Complemental strand, 37577403 - 37577275
Alignment:
Q  286 atcaataaaagaaaatttgag-----actgatatttcaagaactggtctaaaaatagaaaaatagaaaacactagcaaccttagttttggcatgtgaaaa 380  Q
    |||||||||||||||||||||     ||||||||||||||||||  || |||||||||||| ||||||||| ||  |  |||  ||||||||| ||||||    
T  37577403 atcaataaaagaaaatttgagttgagactgatatttcaagaactaatccaaaaatagaaaattagaaaacagtaatattctt-tttttggcatttgaaaa 37577305  T
Q  381 accgaagaatttgagataaattgctagagt 410  Q
    || || ||||||||||| || |||||||||    
T  37577304 actgatgaatttgagattaaatgctagagt 37577275  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 286 - 401
Target Start/End: Original strand, 7969711 - 7969818
Alignment:
Q  286 atcaataaaagaaaatttgagactgatatttcaagaactggtctaaaaatagaaaaatagaaaacactagcaaccttagttttggcatgtgaaaaaccga 385  Q
    |||||||||||||| ||||||||  ||||||||||||||| |  |||||       ||||| |||||||||||||||  ||||||||| || ||||| ||    
T  7969711 atcaataaaagaaattttgagacaaatatttcaagaactgatacaaaaa-------atagagaacactagcaacctt-tttttggcatttgcaaaactga 7969802  T
Q  386 agaatttgagataaat 401  Q
     |||||||||||||||    
T  7969803 tgaatttgagataaat 7969818  T

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Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 506 - 628
Target Start/End: Complemental strand, 17583573 - 17583451
Alignment:
Q  506 gttatgcaaatttctagcttgagaggtttggaagaaccatttggaatcataaggaactctggtgaaagagttcctaaagtaacctgttggacattcgtta 605  Q
    ||||||||||| ||||||||||||||||  |||||||||  |||||||| ||| ||||||| |||||||||| |||||| |||||||||||| ||| | |    
T  17583573 gttatgcaaatatctagcttgagaggttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaaggaacctgttggacgttcttca 17583474  T
Q  606 caaaagagtgtaatttcagtttg 628  Q
    | ||||| |||||||||||||||    
T  17583473 cgaaagactgtaatttcagtttg 17583451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 506 - 630
Target Start/End: Complemental strand, 17591480 - 17591356
Alignment:
Q  506 gttatgcaaatttctagcttgagaggtttggaagaaccatttggaatcataaggaactctggtgaaagagttcctaaagtaacctgttggacattcgtta 605  Q
    ||||||||||| ||||||||||||||||  |||||||||  |||||||| ||| ||||||| |||||||||| |||||||||| |||||||| ||| |      
T  17591480 gttatgcaaatatctagcttgagaggttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaagtaacttgttggacgttcttcg 17591381  T
Q  606 caaaagagtgtaatttcagtttgca 630  Q
    ||||||| |||||||||||| ||||    
T  17591380 caaaagactgtaatttcagtatgca 17591356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 17583806 - 17583721
Alignment:
Q  255 agatttgcatctgcaccacaattgacattagatcaataaaagaaaatttgagactgatatttcaagaactggtctaaaaatagaaaa 341  Q
    |||||||||||||||| | ||||| ||||| |||||| || ||||| |||||| ||||||||||||||||| || ||||||||||||    
T  17583806 agatttgcatctgcacaaaaattgccattaaatcaatgaa-gaaaacttgagattgatatttcaagaactgatccaaaaatagaaaa 17583721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 341
Target Start/End: Complemental strand, 17591684 - 17591629
Alignment:
Q  286 atcaataaaagaaaatttgagactgatatttcaagaactggtctaaaaatagaaaa 341  Q
    |||||||| ||||||||||||| ||||||||||||||||| || ||||||||||||    
T  17591684 atcaataatagaaaatttgagattgatatttcaagaactgatccaaaaatagaaaa 17591629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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