View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9247_low_50 (Length: 231)
Name: NF9247_low_50
Description: NF9247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9247_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 4711486 - 4711285
Alignment:
| Q |
17 |
atgaagttgggtaaaaatgaaggctaataaaaacaggggtgttagttatgctagaaaatgagtatgtgaaatttgagagagagatacgcgcggttgtgag |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4711486 |
atgaagttgggtaaaaatgaaggctaataaaaacaggggtgttagtgatgctagaaaatgagtatgtgaaatttgagagagagatacgcgcggttgtgag |
4711387 |
T |
|
| Q |
117 |
tggaatatcgatattggaaagggaattaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcagtatta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4711386 |
tggaatatcgatattggaaagggaattaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatatta |
4711287 |
T |
|
| Q |
217 |
tc |
218 |
Q |
| |
|
|| |
|
|
| T |
4711286 |
tc |
4711285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 4845414 - 4845213
Alignment:
| Q |
17 |
atgaagttgggtaaaaatgaaggctaataaaaacaggggtgttagttatgctagaaaatgagtatgtgaaatttgagagagagatacgcgcggttgtgag |
116 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
4845414 |
atgaagttgggtaaaaatgaaggcgaataaaaacaggggaactaggaatgctagaaaatgagtatgtgaaatttgagaaagagatatgcgcggttgtgaa |
4845315 |
T |
|
| Q |
117 |
tggaatatcgatattggaaagggaattaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcagtatta |
216 |
Q |
| |
|
|||||| | ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4845314 |
tggaatttggatattggaaagggaattaggagatgatttaaaagatggatttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatatta |
4845215 |
T |
|
| Q |
217 |
tc |
218 |
Q |
| |
|
|| |
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|
| T |
4845214 |
tc |
4845213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 4864623 - 4864819
Alignment:
| Q |
22 |
gttgggtaaaaatgaaggctaataaaaacaggggtgttagttatgctagaaaatgagtatgtgaaatttgagagagagatacgcgcggttgtgagtggaa |
121 |
Q |
| |
|
||||||||||||||||| | || ||||||||| | |||| ||| |||||||||| ||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
4864623 |
gttgggtaaaaatgaagacgaacaaaaacaggcgaactagtgatggtagaaaatgaatatgtgaaacttgagagagagatacgcgcggttgtgtatggaa |
4864722 |
T |
|
| Q |
122 |
tatcgatattggaaagggaattaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcagtattatc |
218 |
Q |
| |
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| ||||| || ||| |||| ||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||| ||||||| |
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|
| T |
4864723 |
tttcgatgtttgaagcggaactaggtgatgttttaagagatgggtttgtggttttttgttcaatgaaagtaaagagatttttgttatcaatattatc |
4864819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 4783237 - 4783041
Alignment:
| Q |
17 |
atgaagttgggtaaaaatgaaggctaataaaaacaggggtgttagttatgct---agaaaatgagtatgtgaaatttgagagagagatacgcgcggttgt |
113 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| || || |||||| ||| | ||||||||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
4783237 |
atgaagttgggtaaaaatgaaggcgaagaaaaatagtggagttagtgatgatgttagaaaatgagtatgtgaaatttgagagagaggcacgtacggttgt |
4783138 |
T |
|
| Q |
114 |
gagtggaatatcgatattggaaagggaattaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatca |
210 |
Q |
| |
|
|| |||||| | |||||| || |||||||||||| || |||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||| |
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|
| T |
4783137 |
gaatggaatttggatatttgagagggaattaggttttgttttaagagatgggtttgtattttttggttcaatgaaggaaaagagattagagttatca |
4783041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 4696578 - 4696379
Alignment:
| Q |
19 |
gaagttgggtaaaaatgaaggctaataaaaacaggggtgttagttatgctagaaaatgagtatgtgaaatttgagagagagatacgcgcggttgtgagtg |
118 |
Q |
| |
|
||||| |||||||||||||||| || ||||||||||| |||| ||||||| ||| ||||||||||||||||||||||||| ||| |||||||||| || |
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|
| T |
4696578 |
gaagtcgggtaaaaatgaaggcgaagaaaaacaggggaagtagtgatgctaggaaaagagtatgtgaaatttgagagagagacacgtgcggttgtgaatg |
4696479 |
T |
|
| Q |
119 |
gaatatcgatattggaaagggaattaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcagtattatc |
218 |
Q |
| |
|
|||| | |||||| || |||| ||||||| | | ||||||||| ||||||||||||||||||| |||||| |||||| |||| ||||||| ||||||| |
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|
| T |
4696478 |
gaatttggatatttgagagggtgttaggtggtattgtaagagatgtgtttgtggtttttggttcattgaaggaaaagagttttgtgttatcattattatc |
4696379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 23 - 217
Target Start/End: Original strand, 4673402 - 4673596
Alignment:
| Q |
23 |
ttgggtaaaaatgaaggctaataaaaacaggggtgttagttatgctagaaaatgagtatgtgaaatttgagagagagatacgcgcggttgtgagtggaat |
122 |
Q |
| |
|
|||||||||||||||||| || |||||||| || ||||| ||||||||||||||||||||||||||||||||||| | ||| ||| |||| ||||| |
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|
| T |
4673402 |
ttgggtaaaaatgaaggcgaagaaaaacagtggaattagtgatgctagaaaatgagtatgtgaaatttgagagagaaacacgtgcgtgtgtgtatggaac |
4673501 |
T |
|
| Q |
123 |
atcgatattggaaagggaattaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcagtattat |
217 |
Q |
| |
|
| |||||| || |||||||||||| || | |||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| | |||||| |
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|
| T |
4673502 |
ttggatatttgagagggaattaggttgtgttgtaagagatgggtatgtggtttttggttcaatgaaagtaaagagatttgtgttattaatattat |
4673596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 4815666 - 4815470
Alignment:
| Q |
17 |
atgaagttgggtaaaaatgaaggctaataaaaacaggggtgttagttatgct---agaaaatgagtatgtgaaatttgagagagagatacgcgcggttgt |
113 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| || || |||||| ||| | ||||||||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
4815666 |
atgaagttgggtaaaaatgaaggcgaagaaaaatagtggagttagtgatgatgttagaaaatgagtatgtgaaatttgagagagaggcacgtccggttgt |
4815567 |
T |
|
| Q |
114 |
gagtggaatatcgatattggaaagggaattaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatca |
210 |
Q |
| |
|
|| |||||| | | |||| || |||||||||||| || |||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
4815566 |
gaatggaatttgggtatttgagagggaattaggttttgttttaagagatgggtttgtattttttggttcaatgaaggaaaagagattagagttatca |
4815470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 4654191 - 4654387
Alignment:
| Q |
19 |
gaagttgggtaaaaatgaaggctaataaaaacaggggtgttagttatgctagaaaatgagtatgtgaaatttgagagagagatacgcgcggttgtgagtg |
118 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||| |||| ||| ||||||||||||||||||||| ||||||||||||||| |||||||||| || |
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|
| T |
4654191 |
gaagtagggtaaaaatgaaggcggttaaaaacaggggaagtagtgatgttagaaaatgagtatgtgaaatatgagagagagatacgtgcggttgtgaatg |
4654290 |
T |
|
| Q |
119 |
gaatatcgatattggaaagggaattaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcagtatt |
215 |
Q |
| |
|
|||| | |||| || |||||| || ||| || | ||||||||||||| |||||||||||||||||||| ||||||| |||| ||||||| |||| |
|
|
| T |
4654291 |
gaatttgagtatttgagagggaactacgtggtgttgtaagagatgggttcgtggtttttggttcaatgaaagtaaagatatttttgttatcaatatt |
4654387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 4637555 - 4637748
Alignment:
| Q |
25 |
gggtaaaaatgaaggctaataaaaacaggggtgttagttatgctagaaaatgagtatgtgaaatttgagagagagatacgcgcggttgtgagtggaatat |
124 |
Q |
| |
|
|||||||||||||| | || |||||||| || ||||| ||||||||||||||||||||||||||||||||||| | ||| ||| |||| ||||| | |
|
|
| T |
4637555 |
gggtaaaaatgaagacgaagaaaaacagtggaattagtgatgctagaaaatgagtatgtgaaatttgagagagaaacacgtgcgtgtgtgtatggaactt |
4637654 |
T |
|
| Q |
125 |
cgatattggaaagggaattaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcagtattatc |
218 |
Q |
| |
|
|||||| || |||||||||| | | |||| |||||||||||||||||||||||||||||| |||||||||||| ||||| | ||||||| |
|
|
| T |
4637655 |
ggatatttgagagggaattagcttgtacattaaaagatgggtttgtggtttttggttcaatgaaagtaaagagatttttgttattaatattatc |
4637748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 4644396 - 4644586
Alignment:
| Q |
25 |
gggtaaaaatgaaggctaataaaaacaggggtgttagttatgctagaaaatgagtatgtgaaatttgagagagagatacgcgcggttgtgagtggaatat |
124 |
Q |
| |
|
|||||||||| ||||| || ||||||||||| ||| |||||||||||||||||||| |||||||||| ||||| ||| ||| |||| ||||| |
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|
| T |
4644396 |
gggtaaaaataaaggcgaagaaaaacaggggaaacagtgatgctagaaaatgagtatgtaaaatttgagaaagagacacgtgcgtgtgtgtatggaactg |
4644495 |
T |
|
| Q |
125 |
cgatattggaaagggaattaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcagtattatc |
218 |
Q |
| |
|
|| ||| | |||| ||| |||||| |||| ||||||| || |||||||||||||||||||| |||||||| |||| ||||||| ||||||| |
|
|
| T |
4644496 |
tgaaatttg---gggatttaagtgatgttttaggagatggattagtggtttttggttcaatgaaagtaaagagttttgtgttatcattattatc |
4644586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 4663388 - 4663488
Alignment:
| Q |
22 |
gttgggtaaaaatgaaggctaataaaaacaggggtgttagttatgctagaaaatgagtatgtgaaatttgagagagagatacgcgcggttgtgagtggaa |
121 |
Q |
| |
|
|||| |||||||||||||| || |||||||||| ||| ||| ||| |||||||||||||||||||||||| |||||||| |||||| ||||||||| |
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|
| T |
4663388 |
gttgagtaaaaatgaaggcgaagaaaaacagggcaactagggatggtaggaaatgagtatgtgaaatttgagagcgagatacgtgcggttttgagtggaa |
4663487 |
T |
|
| Q |
122 |
t |
122 |
Q |
| |
|
| |
|
|
| T |
4663488 |
t |
4663488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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